DETERMINATION OF DEFOCUS GRADIENT DIRECTION, V1.O (Aug-2009)
============================================================

Input tilt-series file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0003/defocus_estimation/stack_for_defocus_estimation.mrcs

Input tilt-angles file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0003/defocus_estimation/series0003_tilts.txt

Output diagnostic file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0003/defocus_estimation//diagnostic.mrc

Tile size:
 384

Input CTF parameters:
 CS[mm],  HT[kV],  AmpCnst,  XMAG,  DStep[um]:
  2.7,    300.0,     0.07,  10000.0,    1.8
                    Angstroms/Pixel:  1.76

Input Fitting parameters:
 CTFMin[0,1], ResMin[A], ResMax[A]:
         0.5,  100000.00,       7.1
 dFMin[A],   dFMax[A],    FStep:
  40000.0,   60000.00,    500.0

Summary of defocus gradients:
=============================
 Image    TiltAngle       DF-left*    DF-center*    DF-right*
-------------------------------------------------------------
    0       -42.0         58000.0      43000.0      51500.0 
    1       -39.0         41000.0      45500.0      60000.0 
    2       -36.0         57500.0      40000.0      42500.0 
    3       -33.0         40000.0      57000.0      41000.0 
    4       -30.0         45500.0      52000.0      54000.0 
    5       -27.0         44500.0      60000.0      42000.0 
    6       -24.0         45000.0      45500.0      58500.0 
    7       -21.0         53500.0      60000.0      56000.0 
    8       -18.0         47000.0      59500.0      60000.0 
    9       -15.0         60000.0      55000.0      60000.0 
   10       -12.0         52000.0      59000.0      60000.0 
   11        -9.0         60000.0      60000.0      60000.0 
   12        -6.0         60000.0      60000.0      60000.0 
   13        -3.0         60000.0      60000.0      60000.0 
   14         0.0         60000.0      60000.0      60000.0 
   15         3.0         60000.0      60000.0      60000.0 
   16         6.0         60000.0      60000.0      60000.0 
   17         9.0         59500.0      60000.0      60000.0 
   18        12.0         59500.0      60000.0      60000.0 
   19        15.0         60000.0      59500.0      60000.0 
   20        18.0         58500.0      59000.0      60000.0 
   21        21.0         58500.0      58500.0      60000.0 
   22        24.0         58000.0      58500.0      60000.0 
   23        27.0         57500.0      58500.0      60000.0 
   24        30.0         56500.0      58500.0      60000.0 
   25        33.0         56000.0      58000.0      60000.0 
   26        36.0         54500.0      57000.0      59000.0 
   27        39.0         54000.0      56000.0      60000.0 
   28        42.0         53500.0      56000.0      59000.0 
   29        45.0         45500.0      55500.0      58500.0 
-------------------------------------------------------------
          * Approx. DF values corresponding to the X columns:
                            left        center        right
                             384         1920         3456
-------------------------------------------------------------


    Tilt angles are according to the convention used in TOMOCTF:
        i.e., images with positive tilt angle have
        increasing underfocus magnitude with the X axis (left to right)