DETERMINATION OF DEFOCUS GRADIENT DIRECTION, V1.O (Aug-2009)
============================================================

Input tilt-series file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0005/defocus_estimation/stack_for_defocus_estimation.mrcs

Input tilt-angles file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0005/defocus_estimation/series0005_tilts_negative.txt

Output diagnostic file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0005/defocus_estimation//diagnostic_negative.mrc

Tile size:
 384

Input CTF parameters:
 CS[mm],  HT[kV],  AmpCnst,  XMAG,  DStep[um]:
  2.7,    300.0,     0.07,  10000.0,    1.8
                    Angstroms/Pixel:  1.76

Input Fitting parameters:
 CTFMin[0,1], ResMin[A], ResMax[A]:
         0.5,  100000.00,       7.1
 dFMin[A],   dFMax[A],    FStep:
  64000.0,   96000.00,    500.0

Summary of defocus gradients:
=============================
 Image    TiltAngle       DF-left*    DF-center*    DF-right*
-------------------------------------------------------------
    0        45.0         73000.0      78000.0      95500.0 
    1        42.0         96000.0      86000.0      96000.0 
    2        39.0         74000.0      66000.0      96000.0 
    3        36.0         94500.0      95500.0      72500.0 
    4        33.0         95500.0      96000.0      96000.0 
    5        30.0         96000.0      91500.0      88000.0 
    6        27.0         96000.0      94000.0      96000.0 
    7        24.0         96000.0      96000.0      96000.0 
    8        21.0         96000.0      96000.0      95500.0 
    9        18.0         96000.0      96000.0      95500.0 
   10        15.0         96000.0      95000.0      96000.0 
   11        12.0         96000.0      94500.0      93500.0 
   12         9.0         94500.0      94500.0      93500.0 
   13         6.0         96000.0      94500.0      92500.0 
   14         3.0         94500.0      94000.0      93500.0 
   15        -0.0         96000.0      94000.0      94500.0 
   16        -3.0         94000.0      93500.0      93500.0 
   17        -6.0         93000.0      93500.0      92000.0 
   18        -9.0         91000.0      93000.0      93500.0 
   19       -12.0         88000.0      90000.0      92000.0 
   20       -15.0         80000.0      90500.0      94000.0 
   21       -18.0         89000.0      90500.0      93500.0 
   22       -21.0         88000.0      89500.0      91500.0 
   23       -24.0         87500.0      88000.0      90000.0 
   24       -27.0         88000.0      89000.0      91000.0 
   25       -30.0         85500.0      88000.0      90000.0 
   26       -33.0         85500.0      87500.0      90000.0 
   27       -36.0         85000.0      86500.0      89000.0 
   28       -39.0         80000.0      85500.0      89500.0 
   29       -42.0         83500.0      84500.0      88000.0 
   30       -45.0         64000.0      85500.0      87500.0 
-------------------------------------------------------------
          * Approx. DF values corresponding to the X columns:
                            left        center        right
                             384         1920         3456
-------------------------------------------------------------


    Tilt angles NOT according to the convention used in TOMOCTF:
        Please, change the sign of tilt angles to follow the convention:
        Images with positive tilt angle must have
        increasing underfocus magnitude with the X axis (left to right)