DETERMINATION OF DEFOCUS GRADIENT DIRECTION, V1.O (Aug-2009)
============================================================

Input tilt-series file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0006/defocus_estimation/stack_for_defocus_estimation.mrcs

Input tilt-angles file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0006/defocus_estimation/series0006_tilts.txt

Output diagnostic file name:
 /gpfs/appion/jchase/16sep28d/protomo_alignments/tiltseries0006/defocus_estimation//diagnostic.mrc

Tile size:
 384

Input CTF parameters:
 CS[mm],  HT[kV],  AmpCnst,  XMAG,  DStep[um]:
  2.7,    300.0,     0.07,  10000.0,    1.8
                    Angstroms/Pixel:  1.76

Input Fitting parameters:
 CTFMin[0,1], ResMin[A], ResMax[A]:
         0.5,  100000.00,       7.1
 dFMin[A],   dFMax[A],    FStep:
  64000.0,   96000.00,    500.0

Summary of defocus gradients:
=============================
 Image    TiltAngle       DF-left*    DF-center*    DF-right*
-------------------------------------------------------------
    0       -45.0         64000.0      96000.0      96000.0 
    1       -42.0         95500.0      92000.0      95000.0 
    2       -39.0         96000.0      96000.0      96000.0 
    3       -36.0         66000.0      96000.0      95500.0 
    4       -33.0         96000.0      96000.0      96000.0 
    5       -30.0         96000.0      96000.0      94500.0 
    6       -27.0         96000.0      95000.0      93500.0 
    7       -24.0         95000.0      95500.0      94500.0 
    8       -21.0         85500.0      92000.0      93000.0 
    9       -18.0         93500.0      93000.0      94000.0 
   10       -15.0         93000.0      93000.0      91000.0 
   11       -12.0         92000.0      92000.0      90500.0 
   12        -9.0         83000.0      92000.0      91000.0 
   13        -6.0         65000.0      92000.0      92500.0 
   14        -3.0         92000.0      90500.0      91500.0 
   15         0.1         93000.0      92000.0      92000.0 
   16         3.0         83500.0      91000.0      91000.0 
   17         6.0         90000.0      91000.0      91000.0 
   18         9.0         66000.0      90500.0      90000.0 
   19        12.0         93500.0      89500.0      90000.0 
   20        15.0         89000.0      89500.0      90500.0 
   21        18.0         88000.0      88500.0      90000.0 
   22        21.0         85500.0      87000.0      89500.0 
   23        24.0         87000.0      87000.0      90000.0 
   24        27.0         86000.0      87500.0      89500.0 
   25        30.0         85000.0      85000.0      87500.0 
   26        33.0         82000.0      86500.0      87000.0 
   27        36.0         80000.0      83500.0      86000.0 
   28        39.0         77000.0      83500.0      83500.0 
   29        42.0         68500.0      83000.0      85500.0 
   30        45.0         71000.0      84000.0      85500.0 
-------------------------------------------------------------
          * Approx. DF values corresponding to the X columns:
                            left        center        right
                             384         1920         3456
-------------------------------------------------------------


    Tilt angles are according to the convention used in TOMOCTF:
        i.e., images with positive tilt angle have
        increasing underfocus magnitude with the X axis (left to right)