[ jbrasch@SEMC-head: Fri May 4 12:45:46 2018 ] /home/anoble/myami/appion/bin/protomo2manualaligner.py \ --rundir=/gpfs/appion/jbrasch/17feb10h/protomo_alignments/tiltseries0048dc/ \ --tiltseries=48 --iteration=15 --sampling=4 --max_image_fraction=0.75 \ --exclude_angles=