<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10277" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2019-05-17</depositionDate>
            <releaseDate>2020-03-02</releaseDate>
            <updateDate>2020-03-02</updateDate>
        </keyDates>
        <title>Tilt-schemes benchmarking for cryo electron tomography of HIV-1 CA-SP1</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-5457-4478</authorORCID>
            <firstName>Beata</firstName>
            <lastName>Turonova</lastName>
            <organization type="academic">Structural and Computational Biology, European Molecular Biology Laboratory</organization>
            <street>Meyerhofstrasse 1</street>
            <townOrCity>Heidelberg</townOrCity>
            <country>Germany</country>
            <postOrZipCode>69117</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-7397-1321</authorORCID>
            <firstName>Martin</firstName>
            <lastName>Beck</lastName>
            <organization type="academic">Structural and Computational Biology, European Molecular Biology Laboratory</organization>
            <street>Meyerhofstrasse 1</street>
            <townOrCity>Heidelberg</townOrCity>
            <country>Germany</country>
            <postOrZipCode>69117</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-5457-4478">Turoňová B</author>
            <author authorORCID="0000-0001-6229-2692">Hagen WJH</author>
            <author authorORCID="0000-0003-1756-6564">Obr M</author>
            <author authorORCID="0000-0002-5934-687X">Mosalaganti S</author>
            <author>Beugelink JW</author>
            <author>Zimmerli CE</author>
            <author authorORCID="0000-0002-8756-329X">Kräusslich HG</author>
            <author authorORCID="0000-0002-7397-1321">Beck M</author>
        </authorsList>
        <datasetSize units="GB">45.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-10277</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-10207</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-5457-4478" order="1">Turoňová B</author>
                    <author authorORCID="0000-0001-6229-2692" order="2">Hagen WJH</author>
                    <author authorORCID="0000-0003-1756-6564" order="3">Obr M</author>
                    <author authorORCID="0000-0002-5934-687X" order="4">Mosalaganti S</author>
                    <author order="5">Beugelink JW</author>
                    <author order="6">Zimmerli CE</author>
                    <author authorORCID="0000-0002-8756-329X" order="7">Kräusslich HG</author>
                    <author authorORCID="0000-0002-7397-1321" order="8">Beck M</author>
                    <title>Benchmarking tomographic acquisition schemes for high-resolution structural biology</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>11</volume>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-020-14535-2</externalReferences>
                    <externalReferences type="pubmed">32054835</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unsorted raw tilt-series for benchmarked tilt-schemes</name>
        <directory>/data/tilt_series</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>35</numImagesOrTiltSeries>
        <framesPerImage>41</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3708</imageWidth>
            <pixelWidth>1.3269</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>1.3269</pixelHeight>
        </dimensions>
        <details>Raw, unsorted, non-dose-filtered tilt-series for 7 different tilt-schemes (5 tilt-series per each tilt-scheme). Each tilt-series contains 41 images - each image is an motion-corrected average of 10-20 frames.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tilt-series collected using the dose-symmetric scheme with 3 degrees tilt-step without any gold fiducials</name>
        <directory>/data/no_fiducials</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>8</numImagesOrTiltSeries>
        <framesPerImage>41</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>1.3269</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>1.3269</pixelHeight>
        </dimensions>
        <details>Tilt-series acquired using the dose-symmetric tilt-scheme with 3 degrees tilt-step (tilt-range from -60 to +60 degrees) without any gold fiducials. The tilt-series are either not complete (i.e. have less than 41 images) and/or are cut in one dimension to remove any fiducials from the field of view. The trimming was done on the frame level to ensure that the final motion-corrected images do not profit from the presence of any fiducials. The tilt angles are contained in the header. The axis angle for all tilt-series was 85.5 degrees.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
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