DETERMINATION OF DEFOCUS GRADIENT DIRECTION, V1.O (Aug-2009) ============================================================ Input tilt-series file name: /gpfs/appion/jbrasch/18nov10g/protomo_alignments/tiltseries0013/defocus_estimation/stack_for_defocus_estimation.mrcs Input tilt-angles file name: /gpfs/appion/jbrasch/18nov10g/protomo_alignments/tiltseries0013/defocus_estimation/series0013_tilts_negative.txt Output diagnostic file name: /gpfs/appion/jbrasch/18nov10g/protomo_alignments/tiltseries0013/defocus_estimation//diagnostic_negative.mrc Tile size: 384 Input CTF parameters: CS[mm], HT[kV], AmpCnst, XMAG, DStep[um]: 0.0, 300.0, 0.07, 10000.0, 1.8 Angstroms/Pixel: 1.84 Input Fitting parameters: CTFMin[0,1], ResMin[A], ResMax[A]: 0.5, 100000.00, 7.3 dFMin[A], dFMax[A], FStep: 32000.0, 48000.00, 500.0 Summary of defocus gradients: ============================= Image TiltAngle DF-left* DF-center* DF-right* ------------------------------------------------------------- 0 52.8 38500.0 48000.0 46000.0 1 50.6 32000.0 47000.0 44500.0 2 48.4 47000.0 47000.0 44500.0 3 46.2 48000.0 46000.0 43500.0 4 44.0 46500.0 47000.0 44000.0 5 41.8 45500.0 45000.0 44000.0 6 39.6 44500.0 43500.0 42500.0 7 37.4 47000.0 44000.0 41500.0 8 35.2 45500.0 43500.0 40500.0 9 33.0 46000.0 42500.0 41500.0 10 30.8 43000.0 41500.0 41500.0 11 28.6 42000.0 41000.0 41000.0 12 26.4 42000.0 41500.0 40000.0 13 24.2 41500.0 41500.0 40500.0 14 22.0 42000.0 42000.0 40000.0 15 19.8 42000.0 41000.0 40000.0 16 17.6 42000.0 41000.0 40500.0 17 15.4 42500.0 40500.0 41000.0 18 13.2 41500.0 42000.0 42000.0 19 11.0 41500.0 42000.0 42000.0 20 8.8 42000.0 42000.0 42000.0 21 6.6 42500.0 42000.0 42500.0 22 4.4 43000.0 43000.0 42500.0 23 2.2 42000.0 43000.0 43000.0 24 0.0 42500.0 43000.0 44000.0 25 -0.0 43500.0 43500.0 43500.0 26 -2.2 43000.0 42500.0 42000.0 27 -4.4 42000.0 42500.0 41500.0 28 -6.6 42500.0 42000.0 42000.0 29 -8.8 42000.0 42000.0 43500.0 30 -11.0 42000.0 43000.0 42000.0 31 -13.2 41000.0 42000.0 43500.0 32 -15.4 42000.0 42000.0 42000.0 33 -17.6 42000.0 42000.0 43500.0 34 -19.8 42000.0 43500.0 44000.0 35 -22.0 41500.0 42000.0 44500.0 36 -24.2 41500.0 42000.0 44500.0 37 -26.4 40500.0 43500.0 45000.0 38 -28.6 41500.0 42500.0 44000.0 39 -30.8 41500.0 41500.0 43500.0 40 -33.0 41500.0 43500.0 44000.0 41 -35.2 40500.0 43000.0 42000.0 42 -37.4 40500.0 42500.0 44500.0 43 -39.6 40000.0 43000.0 43500.0 44 -41.8 41000.0 44500.0 45000.0 45 -44.0 39500.0 43000.0 45500.0 46 -46.2 42000.0 44000.0 43500.0 47 -48.4 36500.0 42500.0 41500.0 48 -50.6 40000.0 45000.0 47000.0 49 -52.8 35000.0 41500.0 44500.0 ------------------------------------------------------------- * Approx. DF values corresponding to the X columns: left center right 384 1920 3456 ------------------------------------------------------------- Tilt angles NOT according to the convention used in TOMOCTF: Please, change the sign of tilt angles to follow the convention: Images with positive tilt angle must have increasing underfocus magnitude with the X axis (left to right) 112.476u 1.122s 1:54.28 99.3% 0+0k 0+0io 0pf+0w