DETERMINATION OF DEFOCUS GRADIENT DIRECTION, V1.O (Aug-2009) ============================================================ Input tilt-series file name: /gpfs/appion/jbrasch/18nov10g/protomo_alignments/tiltseries0039_thick1400/defocus_estimation/stack_for_defocus_estimation.mrcs Input tilt-angles file name: /gpfs/appion/jbrasch/18nov10g/protomo_alignments/tiltseries0039_thick1400/defocus_estimation/series0039_tilts.txt Output diagnostic file name: /gpfs/appion/jbrasch/18nov10g/protomo_alignments/tiltseries0039_thick1400/defocus_estimation//diagnostic.mrc Tile size: 384 Input CTF parameters: CS[mm], HT[kV], AmpCnst, XMAG, DStep[um]: 0.0, 300.0, 0.07, 10000.0, 1.8 Angstroms/Pixel: 1.84 Input Fitting parameters: CTFMin[0,1], ResMin[A], ResMax[A]: 0.5, 100000.00, 7.3 dFMin[A], dFMax[A], FStep: 32000.0, 48000.00, 500.0 Summary of defocus gradients: ============================= Image TiltAngle DF-left* DF-center* DF-right* ------------------------------------------------------------- 0 -30.8 33000.0 33000.0 32000.0 1 -28.6 34500.0 32500.0 33500.0 2 -26.4 34000.0 33000.0 44000.0 3 -24.2 32000.0 33500.0 33000.0 4 -22.0 34000.0 34500.0 39000.0 5 -19.8 33500.0 33500.0 32000.0 6 -17.6 32500.0 34000.0 33500.0 7 -15.4 37000.0 33500.0 34500.0 8 -13.2 34500.0 34500.0 34500.0 9 -11.0 35000.0 34000.0 40000.0 10 -8.8 38000.0 35500.0 34000.0 11 -6.6 35500.0 33000.0 34000.0 12 -4.4 36000.0 34500.0 34500.0 13 -2.2 35000.0 36000.0 35500.0 14 -0.0 35000.0 35000.0 32500.0 15 0.0 34500.0 34500.0 33500.0 16 2.2 34500.0 34500.0 34000.0 17 4.4 34500.0 34500.0 34500.0 18 6.6 34500.0 34500.0 33500.0 19 8.8 34500.0 33000.0 32500.0 20 11.0 34000.0 34000.0 35500.0 21 13.2 33000.0 34500.0 33500.0 22 15.4 34500.0 34500.0 33500.0 23 17.6 33500.0 34500.0 34000.0 24 19.8 34500.0 34000.0 41500.0 25 22.0 34000.0 33000.0 32000.0 26 24.2 34000.0 33500.0 33500.0 27 26.4 32500.0 33000.0 32000.0 28 28.6 33500.0 34500.0 40500.0 29 30.8 32000.0 33000.0 33500.0 30 33.0 33000.0 33500.0 34500.0 31 35.2 32000.0 32500.0 33500.0 32 37.4 32000.0 32000.0 36000.0 33 39.6 32000.0 32000.0 34500.0 34 41.8 32000.0 32500.0 32000.0 35 44.0 33000.0 32000.0 32000.0 36 46.2 32000.0 32000.0 40000.0 37 48.4 39000.0 32000.0 35000.0 38 50.6 43000.0 32000.0 35000.0 39 52.8 34500.0 36500.0 33500.0 ------------------------------------------------------------- * Approx. DF values corresponding to the X columns: left center right 384 1920 3456 ------------------------------------------------------------- Tilt angles are according to the convention used in TOMOCTF: i.e., images with positive tilt angle have increasing underfocus magnitude with the X axis (left to right) 84.289u 0.985s 1:25.51 99.7% 0+0k 0+0io 0pf+0w