=== RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = perk + Slave 1 runs on host = perk + Slave 2 runs on host = perk + Slave 3 runs on host = perk ================= + Reading Refine3D/job249/run_data.star... + Using movie pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.5685 A + Using coord. pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 1.137 A + Using dose per frame from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.944055 e/A^2 + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job249/run_half1_class001_unfil.mrc - Half map 2: Refine3D/job249/run_half2_class001_unfil.mrc - Mask: MaskCreate/job255/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.01/8.50 hrs ~~(,_,"> 0.02/7.56 hrs ~~(,_,"> 0.03/7.71 hrs ~~(,_,"> 0.04/7.61 hrs ~~(,_,"> 0.05/7.65 hrs ~~(,_,"> 0.06/8.15 hrs ~~(,_,"> 0.07/7.99 hrs ~~(,_,"> 0.07/7.73 hrs ~~(,_,"> 0.08/7.58 hrs ~~(,_,"> 0.09/7.48 hrs ~~(,_,"> 0.09/7.30 hrs ~~(,_,"> 0.10/7.32 hrs ~~(,_,"> 0.12/7.54 hrs ~~(,_,"> 0.13/7.66 hrs ~~(,_,"> 0.14/7.93 hrs .~~(,_,"> 0.15/8.09 hrs .~~(,_,"> 0.16/8.12 hrs .~~(,_,"> 0.17/8.05 hrs .~~(,_,"> 0.19/8.29 hrs .~~(,_,"> 0.20/8.42 hrs .~~(,_,"> 0.21/8.39 hrs .~~(,_,"> 0.22/8.33 hrs .~~(,_,"> 0.22/8.27 hrs .~~(,_,"> 0.24/8.35 hrs .~~(,_,"> 0.25/8.39 hrs .~~(,_,"> 0.25/8.31 hrs .~~(,_,"> 0.26/8.26 hrs .~~(,_,"> 0.27/8.27 hrs .~~(,_,"> 0.28/8.35 hrs ..~~(,_,"> 0.30/8.42 hrs ..~~(,_,"> 0.31/8.45 hrs ..~~(,_,"> 0.32/8.48 hrs ..~~(,_,"> 0.33/8.46 hrs ..~~(,_,"> 0.34/8.41 hrs ..~~(,_,"> 0.35/8.43 hrs ..~~(,_,"> 0.36/8.45 hrs ..~~(,_,"> 0.37/8.45 hrs ..~~(,_,"> 0.38/8.51 hrs ..~~(,_,"> 0.39/8.60 hrs ..~~(,_,"> 0.41/8.64 hrs ..~~(,_,"> 0.42/8.69 hrs ..~~(,_,"> 0.43/8.72 hrs ..~~(,_,"> 0.44/8.77 hrs ...~~(,_,"> 0.46/8.81 hrs ...~~(,_,"> 0.47/8.90 hrs ...~~(,_,"> 0.49/8.97 hrs ...~~(,_,"> 0.50/9.07 hrs ...~~(,_,"> 0.51/9.11 hrs ...~~(,_,"> 0.53/9.16 hrs ...~~(,_,"> 0.54/9.18 hrs ...~~(,_,"> 0.55/9.14 hrs ...~~(,_,"> 0.56/9.20 hrs ...~~(,_,"> 0.58/9.25 hrs ...~~(,_,"> 0.59/9.28 hrs ...~~(,_,"> 0.60/9.33 hrs ...~~(,_,"> 0.62/9.33 hrs ...~~(,_,"> 0.63/9.36 hrs ....~~(,_,"> 0.64/9.38 hrs ....~~(,_,"> 0.65/9.41 hrs ....~~(,_,"> 0.67/9.46 hrs ....~~(,_,"> 0.68/9.49 hrs ....~~(,_,"> 0.69/9.46 hrs ....~~(,_,"> 0.70/9.42 hrs ....~~(,_,"> 0.71/9.44 hrs ....~~(,_,"> 0.73/9.51 hrs ....~~(,_,"> 0.74/9.51 hrs ....~~(,_,"> 0.75/9.55 hrs ....~~(,_,"> 0.76/9.56 hrs ....~~(,_,"> 0.78/9.60 hrs ....~~(,_,"> 0.79/9.61 hrs ....~~(,_,"> 0.80/9.60 hrs .....~~(,_,"> 0.81/9.60 hrs .....~~(,_,"> 0.82/9.61 hrs .....~~(,_,"> 0.84/9.62 hrs .....~~(,_,"> 0.85/9.64 hrs .....~~(,_,"> 0.87/9.69 hrs .....~~(,_,"> 0.88/9.70 hrs .....~~(,_,"> 0.89/9.69 hrs .....~~(,_,"> 0.90/9.68 hrs .....~~(,_,"> 0.91/9.71 hrs .....~~(,_,"> 0.92/9.69 hrs .....~~(,_,"> 0.94/9.70 hrs .....~~(,_,"> 0.95/9.74 hrs .....~~(,_,"> 0.96/9.73 hrs .....~~(,_,"> 0.97/9.73 hrs ......~~(,_,"> 0.99/9.75 hrs ......~~(,_,"> 1.00/9.79 hrs ......~~(,_,"> 1.02/9.84 hrs ......~~(,_,"> 1.03/9.85 hrs ......~~(,_,"> 1.04/9.85 hrs ......~~(,_,"> 1.05/9.81 hrs ......~~(,_,"> 1.06/9.79 hrs ......~~(,_,"> 1.07/9.81 hrs ......~~(,_,"> 1.09/9.85 hrs ......~~(,_,"> 1.10/9.85 hrs ......~~(,_,"> 1.11/9.85 hrs ......~~(,_,"> 1.13/9.88 hrs ......~~(,_,"> 1.14/9.89 hrs ......~~(,_,"> 1.15/9.88 hrs ......~~(,_,"> 1.16/9.82 hrs .......~~(,_,"> 1.17/9.83 hrs .......~~(,_,"> 1.18/9.86 hrs .......~~(,_,"> 1.20/9.90 hrs .......~~(,_,"> 1.21/9.91 hrs .......~~(,_,"> 1.23/9.93 hrs .......~~(,_,"> 1.24/9.93 hrs .......~~(,_,"> 1.25/9.95 hrs .......~~(,_,"> 1.27/9.96 hrs .......~~(,_,"> 1.28/9.97 hrs .......~~(,_,"> 1.29/9.99 hrs .......~~(,_,"> 1.31/10.03 hrs .......~~(,_,"> 1.32/10.05 hrs .......~~(,_,"> 1.33/10.03 hrs .......~~(,_,"> 1.34/10.03 hrs ........~~(,_,"> 1.36/10.05 hrs ........~~(,_,"> 1.37/10.04 hrs ........~~(,_,"> 1.38/10.06 hrs ........~~(,_,"> 1.40/10.10 hrs ........~~(,_,"> 1.42/10.12 hrs ........~~(,_,"> 1.43/10.13 hrs ........~~(,_,"> 1.44/10.12 hrs ........~~(,_,"> 1.45/10.14 hrs ........~~(,_,"> 1.47/10.16 hrs ........~~(,_,"> 1.48/10.14 hrs ........~~(,_,"> 1.49/10.15 hrs ........~~(,_,"> 1.51/10.15 hrs ........~~(,_,"> 1.52/10.16 hrs ........~~(,_,"> 1.53/10.14 hrs .........~~(,_,"> 1.54/10.15 hrs .........~~(,_,"> 1.55/10.14 hrs .........~~(,_,"> 1.57/10.16 hrs .........~~(,_,"> 1.58/10.16 hrs .........~~(,_,"> 1.59/10.17 hrs .........~~(,_,"> 1.60/10.15 hrs .........~~(,_,"> 1.61/10.15 hrs .........~~(,_,"> 1.62/10.15 hrs .........~~(,_,"> 1.64/10.16 hrs .........~~(,_,"> 1.65/10.17 hrs .........~~(,_,"> 1.67/10.20 hrs .........~~(,_,"> 1.68/10.21 hrs .........~~(,_,"> 1.69/10.19 hrs .........~~(,_,"> 1.70/10.17 hrs ..........~~(,_,"> 1.71/10.19 hrs ..........~~(,_,"> 1.73/10.20 hrs ..........~~(,_,"> 1.74/10.20 hrs ..........~~(,_,"> 1.75/10.19 hrs ..........~~(,_,"> 1.76/10.18 hrs ..........~~(,_,"> 1.77/10.16 hrs ..........~~(,_,"> 1.78/10.14 hrs ..........~~(,_,"> 1.79/10.13 hrs ..........~~(,_,"> 1.80/10.12 hrs ..........~~(,_,"> 1.80/10.09 hrs ..........~~(,_,"> 1.82/10.11 hrs ..........~~(,_,"> 1.84/10.13 hrs ..........~~(,_,"> 1.85/10.12 hrs ..........~~(,_,"> 1.86/10.12 hrs ...........~~(,_,"> 1.87/10.14 hrs ...........~~(,_,"> 1.88/10.14 hrs ...........~~(,_,"> 1.90/10.16 hrs ...........~~(,_,"> 1.91/10.17 hrs ...........~~(,_,"> 1.92/10.16 hrs ...........~~(,_,"> 1.93/10.15 hrs ...........~~(,_,"> 1.95/10.15 hrs ...........~~(,_,"> 1.96/10.17 hrs ...........~~(,_,"> 1.98/10.19 hrs ...........~~(,_,"> 1.99/10.20 hrs ...........~~(,_,"> 2.00/10.20 hrs ...........~~(,_,"> 2.02/10.21 hrs ...........~~(,_,"> 2.03/10.21 hrs ...........~~(,_,"> 2.04/10.22 hrs ...........~~(,_,"> 2.06/10.23 hrs ............~~(,_,"> 2.07/10.25 hrs ............~~(,_,"> 2.09/10.25 hrs ............~~(,_,"> 2.09/10.22 hrs ............~~(,_,"> 2.11/10.26 hrs ............~~(,_,"> 2.13/10.27 hrs ............~~(,_,"> 2.14/10.28 hrs ............~~(,_,"> 2.16/10.29 hrs ............~~(,_,"> 2.17/10.30 hrs ............~~(,_,"> 2.19/10.32 hrs ............~~(,_,"> 2.20/10.34 hrs ............~~(,_,"> 2.22/10.36 hrs ............~~(,_,"> 2.23/10.37 hrs ............~~(,_,"> 2.25/10.38 hrs ............~~(,_,"> 2.26/10.39 hrs .............~~(,_,"> 2.28/10.40 hrs .............~~(,_,"> 2.29/10.41 hrs .............~~(,_,"> 2.31/10.43 hrs .............~~(,_,"> 2.32/10.43 hrs .............~~(,_,"> 2.33/10.44 hrs .............~~(,_,"> 2.35/10.45 hrs .............~~(,_,"> 2.36/10.46 hrs .............~~(,_,"> 2.38/10.46 hrs .............~~(,_,"> 2.39/10.48 hrs .............~~(,_,"> 2.41/10.49 hrs .............~~(,_,"> 2.42/10.51 hrs .............~~(,_,"> 2.44/10.52 hrs .............~~(,_,"> 2.45/10.54 hrs .............~~(,_,"> 2.47/10.54 hrs ..............~~(,_,"> 2.48/10.55 hrs ..............~~(,_,"> 2.50/10.56 hrs ..............~~(,_,"> 2.51/10.56 hrs ..............~~(,_,"> 2.52/10.55 hrs ..............~~(,_,"> 2.54/10.56 hrs ..............~~(,_,"> 2.55/10.57 hrs ..............~~(,_,"> 2.56/10.57 hrs ..............~~(,_,"> 2.58/10.58 hrs ..............~~(,_,"> 2.59/10.58 hrs ..............~~(,_,"> 2.60/10.57 hrs ..............~~(,_,"> 2.61/10.57 hrs ..............~~(,_,"> 2.62/10.57 hrs ..............~~(,_,"> 2.64/10.57 hrs ..............~~(,_,"> 2.65/10.57 hrs ...............~~(,_,"> 2.66/10.56 hrs ...............~~(,_,"> 2.67/10.56 hrs ...............~~(,_,"> 2.68/10.56 hrs ...............~~(,_,"> 2.70/10.56 hrs ...............~~(,_,"> 2.71/10.57 hrs ...............~~(,_,"> 2.72/10.58 hrs ...............~~(,_,"> 2.74/10.57 hrs ...............~~(,_,"> 2.75/10.57 hrs ...............~~(,_,"> 2.76/10.58 hrs ...............~~(,_,"> 2.77/10.56 hrs ...............~~(,_,"> 2.78/10.57 hrs ...............~~(,_,"> 2.79/10.55 hrs ...............~~(,_,"> 2.80/10.54 hrs ...............~~(,_,"> 2.81/10.54 hrs ................~~(,_,"> 2.83/10.55 hrs ................~~(,_,"> 2.84/10.54 hrs ................~~(,_,"> 2.86/10.55 hrs ................~~(,_,"> 2.87/10.55 hrs ................~~(,_,"> 2.87/10.53 hrs ................~~(,_,"> 2.89/10.53 hrs ................~~(,_,"> 2.90/10.53 hrs ................~~(,_,"> 2.91/10.51 hrs ................~~(,_,"> 2.92/10.51 hrs ................~~(,_,"> 2.93/10.51 hrs ................~~(,_,"> 2.95/10.52 hrs ................~~(,_,"> 2.96/10.51 hrs ................~~(,_,"> 2.97/10.51 hrs ................~~(,_,"> 2.97/10.49 hrs .................~~(,_,"> 2.98/10.48 hrs .................~~(,_,"> 2.99/10.47 hrs .................~~(,_,"> 3.01/10.47 hrs .................~~(,_,"> 3.02/10.47 hrs .................~~(,_,"> 3.03/10.45 hrs .................~~(,_,"> 3.03/10.44 hrs .................~~(,_,"> 3.04/10.43 hrs .................~~(,_,"> 3.05/10.43 hrs .................~~(,_,"> 3.06/10.42 hrs .................~~(,_,"> 3.08/10.41 hrs .................~~(,_,"> 3.09/10.41 hrs .................~~(,_,"> 3.09/10.39 hrs .................~~(,_,"> 3.10/10.39 hrs .................~~(,_,"> 3.11/10.38 hrs ..................~~(,_,"> 3.12/10.37 hrs ..................~~(,_,"> 3.13/10.37 hrs ..................~~(,_,"> 3.15/10.37 hrs ..................~~(,_,"> 3.16/10.36 hrs ..................~~(,_,"> 3.17/10.35 hrs ..................~~(,_,"> 3.18/10.35 hrs ..................~~(,_,"> 3.19/10.34 hrs ..................~~(,_,"> 3.20/10.33 hrs ..................~~(,_,"> 3.21/10.33 hrs ..................~~(,_,"> 3.22/10.33 hrs ..................~~(,_,"> 3.23/10.33 hrs ..................~~(,_,"> 3.25/10.34 hrs ..................~~(,_,"> 3.26/10.34 hrs ..................~~(,_,"> 3.27/10.33 hrs ..................~~(,_,"> 3.28/10.32 hrs ...................~~(,_,"> 3.29/10.32 hrs ...................~~(,_,"> 3.30/10.32 hrs ...................~~(,_,"> 3.31/10.30 hrs ...................~~(,_,"> 3.32/10.29 hrs ...................~~(,_,"> 3.32/10.27 hrs ...................~~(,_,"> 3.33/10.26 hrs ...................~~(,_,"> 3.34/10.24 hrs ...................~~(,_,"> 3.34/10.23 hrs ...................~~(,_,"> 3.35/10.20 hrs ...................~~(,_,"> 3.36/10.20 hrs ...................~~(,_,"> 3.37/10.18 hrs ...................~~(,_,"> 3.37/10.17 hrs ...................~~(,_,"> 3.38/10.15 hrs ...................~~(,_,"> 3.39/10.14 hrs ....................~~(,_,"> 3.40/10.14 hrs ....................~~(,_,"> 3.41/10.13 hrs ....................~~(,_,"> 3.42/10.12 hrs ....................~~(,_,"> 3.43/10.11 hrs ....................~~(,_,"> 3.44/10.10 hrs ....................~~(,_,"> 3.45/10.10 hrs ....................~~(,_,"> 3.46/10.10 hrs ....................~~(,_,"> 3.47/10.09 hrs ....................~~(,_,"> 3.47/10.07 hrs ....................~~(,_,"> 3.48/10.06 hrs ....................~~(,_,"> 3.49/10.06 hrs ....................~~(,_,"> 3.50/10.06 hrs ....................~~(,_,"> 3.51/10.05 hrs ....................~~(,_,"> 3.52/10.04 hrs .....................~~(,_,"> 3.53/10.03 hrs .....................~~(,_,"> 3.54/10.03 hrs .....................~~(,_,"> 3.55/10.03 hrs .....................~~(,_,"> 3.56/10.02 hrs .....................~~(,_,"> 3.57/10.01 hrs .....................~~(,_,"> 3.58/10.01 hrs .....................~~(,_,"> 3.59/10.02 hrs .....................~~(,_,"> 3.61/10.02 hrs .....................~~(,_,"> 3.62/10.02 hrs .....................~~(,_,"> 3.63/10.03 hrs .....................~~(,_,"> 3.65/10.03 hrs .....................~~(,_,"> 3.66/10.03 hrs .....................~~(,_,"> 3.67/10.02 hrs .....................~~(,_,"> 3.68/10.02 hrs ......................~~(,_,"> 3.69/10.03 hrs ......................~~(,_,"> 3.71/10.03 hrs ......................~~(,_,"> 3.72/10.03 hrs ......................~~(,_,"> 3.73/10.03 hrs ......................~~(,_,"> 3.74/10.03 hrs ......................~~(,_,"> 3.76/10.04 hrs ......................~~(,_,"> 3.77/10.04 hrs ......................~~(,_,"> 3.78/10.04 hrs ......................~~(,_,"> 3.79/10.04 hrs ......................~~(,_,"> 3.81/10.05 hrs ......................~~(,_,"> 3.82/10.05 hrs ......................~~(,_,"> 3.83/10.06 hrs ......................~~(,_,"> 3.85/10.06 hrs ......................~~(,_,"> 3.86/10.06 hrs .......................~~(,_,"> 3.87/10.05 hrs .......................~~(,_,"> 3.88/10.05 hrs .......................~~(,_,"> 3.89/10.05 hrs .......................~~(,_,"> 3.90/10.05 hrs .......................~~(,_,"> 3.91/10.05 hrs .......................~~(,_,"> 3.92/10.04 hrs .......................~~(,_,"> 3.93/10.04 hrs .......................~~(,_,"> 3.94/10.04 hrs .......................~~(,_,"> 3.96/10.04 hrs .......................~~(,_,"> 3.97/10.04 hrs .......................~~(,_,"> 3.98/10.04 hrs .......................~~(,_,"> 3.99/10.03 hrs .......................~~(,_,"> 3.99/10.02 hrs .......................~~(,_,"> 4.00/10.00 hrs .......................~~(,_,"> 4.01/10.00 hrs ........................~~(,_,"> 4.02/9.98 hrs ........................~~(,_,"> 4.02/9.97 hrs ........................~~(,_,"> 4.03/9.96 hrs ........................~~(,_,"> 4.04/9.94 hrs ........................~~(,_,"> 4.04/9.93 hrs ........................~~(,_,"> 4.05/9.92 hrs ........................~~(,_,"> 4.06/9.92 hrs ........................~~(,_,"> 4.07/9.91 hrs ........................~~(,_,"> 4.07/9.90 hrs ........................~~(,_,"> 4.09/9.90 hrs ........................~~(,_,"> 4.10/9.89 hrs ........................~~(,_,"> 4.10/9.87 hrs ........................~~(,_,"> 4.11/9.88 hrs ........................~~(,_,"> 4.12/9.87 hrs .........................~~(,_,"> 4.13/9.86 hrs .........................~~(,_,"> 4.14/9.86 hrs .........................~~(,_,"> 4.15/9.86 hrs .........................~~(,_,"> 4.16/9.86 hrs .........................~~(,_,"> 4.17/9.85 hrs .........................~~(,_,"> 4.19/9.85 hrs .........................~~(,_,"> 4.20/9.85 hrs .........................~~(,_,"> 4.21/9.86 hrs .........................~~(,_,"> 4.22/9.86 hrs .........................~~(,_,"> 4.23/9.85 hrs .........................~~(,_,"> 4.24/9.85 hrs .........................~~(,_,"> 4.25/9.85 hrs .........................~~(,_,"> 4.26/9.85 hrs .........................~~(,_,"> 4.27/9.84 hrs ..........................~~(,_,"> 4.28/9.84 hrs ..........................~~(,_,"> 4.29/9.82 hrs ..........................~~(,_,"> 4.29/9.81 hrs ..........................~~(,_,"> 4.30/9.80 hrs ..........................~~(,_,"> 4.31/9.79 hrs ..........................~~(,_,"> 4.32/9.79 hrs ..........................~~(,_,"> 4.33/9.78 hrs ..........................~~(,_,"> 4.34/9.78 hrs ..........................~~(,_,"> 4.34/9.77 hrs ..........................~~(,_,"> 4.35/9.76 hrs ..........................~~(,_,"> 4.37/9.77 hrs ..........................~~(,_,"> 4.37/9.76 hrs ..........................~~(,_,"> 4.38/9.76 hrs ..........................~~(,_,"> 4.40/9.76 hrs ...........................~~(,_,"> 4.41/9.76 hrs ...........................~~(,_,"> 4.42/9.76 hrs ...........................~~(,_,"> 4.43/9.76 hrs ...........................~~(,_,"> 4.44/9.75 hrs ...........................~~(,_,"> 4.44/9.73 hrs ...........................~~(,_,"> 4.45/9.73 hrs ...........................~~(,_,"> 4.46/9.72 hrs ...........................~~(,_,"> 4.47/9.73 hrs ...........................~~(,_,"> 4.49/9.73 hrs ...........................~~(,_,"> 4.50/9.72 hrs ...........................~~(,_,"> 4.51/9.72 hrs ...........................~~(,_,"> 4.52/9.72 hrs ...........................~~(,_,"> 4.53/9.72 hrs ...........................~~(,_,"> 4.54/9.73 hrs ............................~~(,_,"> 4.55/9.73 hrs ............................~~(,_,"> 4.57/9.73 hrs ............................~~(,_,"> 4.58/9.73 hrs ............................~~(,_,"> 4.59/9.73 hrs ............................~~(,_,"> 4.60/9.73 hrs ............................~~(,_,"> 4.61/9.72 hrs ............................~~(,_,"> 4.62/9.72 hrs ............................~~(,_,"> 4.63/9.73 hrs ............................~~(,_,"> 4.65/9.73 hrs ............................~~(,_,"> 4.65/9.72 hrs ............................~~(,_,"> 4.67/9.72 hrs ............................~~(,_,"> 4.67/9.71 hrs ............................~~(,_,"> 4.68/9.71 hrs ............................~~(,_,"> 4.70/9.71 hrs .............................~~(,_,"> 4.71/9.71 hrs .............................~~(,_,"> 4.72/9.72 hrs .............................~~(,_,"> 4.73/9.71 hrs .............................~~(,_,"> 4.74/9.71 hrs .............................~~(,_,"> 4.75/9.71 hrs .............................~~(,_,"> 4.76/9.71 hrs .............................~~(,_,"> 4.78/9.71 hrs .............................~~(,_,"> 4.79/9.71 hrs .............................~~(,_,"> 4.80/9.70 hrs .............................~~(,_,"> 4.80/9.70 hrs .............................~~(,_,"> 4.82/9.70 hrs .............................~~(,_,"> 4.83/9.71 hrs .............................~~(,_,"> 4.84/9.71 hrs .............................~~(,_,"> 4.86/9.72 hrs ..............................~~(,_,"> 4.87/9.71 hrs ..............................~~(,_,"> 4.87/9.70 hrs ..............................~~(,_,"> 4.88/9.69 hrs ..............................~~(,_,"> 4.89/9.68 hrs ..............................~~(,_,"> 4.90/9.69 hrs ..............................~~(,_,"> 4.91/9.69 hrs ..............................~~(,_,"> 4.92/9.68 hrs ..............................~~(,_,"> 4.93/9.68 hrs ..............................~~(,_,"> 4.94/9.68 hrs ..............................~~(,_,"> 4.95/9.68 hrs ..............................~~(,_,"> 4.96/9.68 hrs ..............................~~(,_,"> 4.97/9.67 hrs ..............................~~(,_,"> 4.98/9.67 hrs ..............................~~(,_,"> 4.99/9.66 hrs ..............................~~(,_,"> 5.00/9.66 hrs ...............................~~(,_,"> 5.01/9.66 hrs ...............................~~(,_,"> 5.02/9.66 hrs ...............................~~(,_,"> 5.03/9.65 hrs ...............................~~(,_,"> 5.04/9.65 hrs ...............................~~(,_,"> 5.05/9.64 hrs ...............................~~(,_,"> 5.05/9.63 hrs ...............................~~(,_,"> 5.06/9.63 hrs ...............................~~(,_,"> 5.07/9.62 hrs ...............................~~(,_,"> 5.08/9.62 hrs ...............................~~(,_,"> 5.09/9.61 hrs ...............................~~(,_,"> 5.10/9.61 hrs ...............................~~(,_,"> 5.11/9.61 hrs ...............................~~(,_,"> 5.12/9.60 hrs ...............................~~(,_,"> 5.13/9.60 hrs ................................~~(,_,"> 5.14/9.60 hrs ................................~~(,_,"> 5.15/9.60 hrs ................................~~(,_,"> 5.16/9.60 hrs ................................~~(,_,"> 5.17/9.60 hrs ................................~~(,_,"> 5.18/9.60 hrs ................................~~(,_,"> 5.19/9.60 hrs ................................~~(,_,"> 5.21/9.60 hrs ................................~~(,_,"> 5.22/9.60 hrs ................................~~(,_,"> 5.23/9.60 hrs ................................~~(,_,"> 5.24/9.60 hrs ................................~~(,_,"> 5.25/9.60 hrs ................................~~(,_,"> 5.26/9.60 hrs ................................~~(,_,"> 5.28/9.60 hrs ................................~~(,_,"> 5.29/9.60 hrs .................................~~(,_,"> 5.30/9.60 hrs .................................~~(,_,"> 5.31/9.60 hrs .................................~~(,_,"> 5.32/9.60 hrs .................................~~(,_,"> 5.33/9.61 hrs .................................~~(,_,"> 5.35/9.61 hrs .................................~~(,_,"> 5.36/9.61 hrs .................................~~(,_,"> 5.37/9.61 hrs .................................~~(,_,"> 5.38/9.61 hrs .................................~~(,_,"> 5.39/9.61 hrs .................................~~(,_,"> 5.40/9.61 hrs .................................~~(,_,"> 5.41/9.60 hrs .................................~~(,_,"> 5.42/9.60 hrs .................................~~(,_,"> 5.43/9.60 hrs .................................~~(,_,"> 5.44/9.60 hrs ..................................~~(,_,"> 5.46/9.60 hrs ..................................~~(,_,"> 5.47/9.60 hrs ..................................~~(,_,"> 5.48/9.60 hrs ..................................~~(,_,"> 5.49/9.60 hrs ..................................~~(,_,"> 5.50/9.61 hrs ..................................~~(,_,"> 5.51/9.61 hrs ..................................~~(,_,"> 5.52/9.60 hrs ..................................~~(,_,"> 5.53/9.60 hrs ..................................~~(,_,"> 5.55/9.60 hrs ..................................~~(,_,"> 5.56/9.60 hrs ..................................~~(,_,"> 5.57/9.60 hrs ..................................~~(,_,"> 5.58/9.60 hrs ..................................~~(,_,"> 5.59/9.60 hrs ..................................~~(,_,"> 5.60/9.60 hrs ...................................~~(,_,"> 5.61/9.59 hrs ...................................~~(,_,"> 5.62/9.59 hrs ...................................~~(,_,"> 5.62/9.58 hrs ...................................~~(,_,"> 5.63/9.57 hrs ...................................~~(,_,"> 5.64/9.56 hrs ...................................~~(,_,"> 5.65/9.56 hrs ...................................~~(,_,"> 5.66/9.56 hrs ...................................~~(,_,"> 5.66/9.55 hrs ...................................~~(,_,"> 5.67/9.54 hrs ...................................~~(,_,"> 5.67/9.53 hrs ...................................~~(,_,"> 5.68/9.53 hrs ...................................~~(,_,"> 5.69/9.52 hrs ...................................~~(,_,"> 5.70/9.53 hrs ...................................~~(,_,"> 5.71/9.52 hrs ....................................~~(,_,"> 5.72/9.52 hrs ....................................~~(,_,"> 5.74/9.52 hrs ....................................~~(,_,"> 5.75/9.52 hrs ....................................~~(,_,"> 5.76/9.52 hrs ....................................~~(,_,"> 5.77/9.52 hrs ....................................~~(,_,"> 5.78/9.53 hrs ....................................~~(,_,"> 5.79/9.53 hrs ....................................~~(,_,"> 5.81/9.53 hrs ....................................~~(,_,"> 5.82/9.53 hrs ....................................~~(,_,"> 5.83/9.53 hrs ....................................~~(,_,"> 5.84/9.54 hrs ....................................~~(,_,"> 5.86/9.54 hrs ....................................~~(,_,"> 5.87/9.54 hrs ....................................~~(,_,"> 5.88/9.54 hrs ....................................~~(,_,"> 5.89/9.54 hrs .....................................~~(,_,"> 5.91/9.55 hrs .....................................~~(,_,"> 5.92/9.55 hrs .....................................~~(,_,"> 5.94/9.55 hrs .....................................~~(,_,"> 5.95/9.55 hrs .....................................~~(,_,"> 5.96/9.55 hrs .....................................~~(,_,"> 5.97/9.55 hrs .....................................~~(,_,"> 5.98/9.55 hrs .....................................~~(,_,"> 5.99/9.55 hrs .....................................~~(,_,"> 6.00/9.56 hrs .....................................~~(,_,"> 6.02/9.56 hrs .....................................~~(,_,"> 6.03/9.56 hrs .....................................~~(,_,"> 6.04/9.56 hrs .....................................~~(,_,"> 6.05/9.56 hrs .....................................~~(,_,"> 6.06/9.55 hrs ......................................~~(,_,"> 6.07/9.55 hrs ......................................~~(,_,"> 6.07/9.54 hrs ......................................~~(,_,"> 6.08/9.53 hrs ......................................~~(,_,"> 6.09/9.53 hrs ......................................~~(,_,"> 6.10/9.53 hrs ......................................~~(,_,"> 6.11/9.53 hrs ......................................~~(,_,"> 6.12/9.52 hrs ......................................~~(,_,"> 6.12/9.52 hrs ......................................~~(,_,"> 6.13/9.51 hrs ......................................~~(,_,"> 6.14/9.51 hrs ......................................~~(,_,"> 6.15/9.51 hrs ......................................~~(,_,"> 6.16/9.50 hrs ......................................~~(,_,"> 6.17/9.49 hrs ......................................~~(,_,"> 6.17/9.49 hrs .......................................~~(,_,"> 6.18/9.48 hrs .......................................~~(,_,"> 6.19/9.47 hrs .......................................~~(,_,"> 6.19/9.46 hrs .......................................~~(,_,"> 6.20/9.46 hrs .......................................~~(,_,"> 6.20/9.45 hrs .......................................~~(,_,"> 6.21/9.44 hrs .......................................~~(,_,"> 6.22/9.44 hrs .......................................~~(,_,"> 6.23/9.44 hrs .......................................~~(,_,"> 6.24/9.43 hrs .......................................~~(,_,"> 6.24/9.42 hrs .......................................~~(,_,"> 6.25/9.42 hrs .......................................~~(,_,"> 6.25/9.41 hrs .......................................~~(,_,"> 6.26/9.40 hrs .......................................~~(,_,"> 6.27/9.40 hrs ........................................~~(,_,"> 6.28/9.39 hrs ........................................~~(,_,"> 6.28/9.39 hrs ........................................~~(,_,"> 6.29/9.38 hrs ........................................~~(,_,"> 6.30/9.38 hrs ........................................~~(,_,"> 6.31/9.37 hrs ........................................~~(,_,"> 6.31/9.37 hrs ........................................~~(,_,"> 6.32/9.36 hrs ........................................~~(,_,"> 6.33/9.36 hrs ........................................~~(,_,"> 6.34/9.36 hrs ........................................~~(,_,"> 6.36/9.36 hrs ........................................~~(,_,"> 6.37/9.36 hrs ........................................~~(,_,"> 6.38/9.36 hrs ........................................~~(,_,"> 6.39/9.36 hrs ........................................~~(,_,"> 6.39/9.35 hrs .........................................~~(,_,"> 6.40/9.34 hrs .........................................~~(,_,"> 6.41/9.34 hrs .........................................~~(,_,"> 6.42/9.34 hrs .........................................~~(,_,"> 6.42/9.33 hrs .........................................~~(,_,"> 6.43/9.33 hrs .........................................~~(,_,"> 6.44/9.32 hrs .........................................~~(,_,"> 6.45/9.32 hrs .........................................~~(,_,"> 6.45/9.31 hrs .........................................~~(,_,"> 6.46/9.30 hrs .........................................~~(,_,"> 6.46/9.30 hrs .........................................~~(,_,"> 6.47/9.29 hrs .........................................~~(,_,"> 6.48/9.28 hrs .........................................~~(,_,"> 6.48/9.28 hrs .........................................~~(,_,"> 6.49/9.27 hrs ..........................................~~(,_,"> 6.50/9.26 hrs ..........................................~~(,_,"> 6.50/9.26 hrs ..........................................~~(,_,"> 6.51/9.25 hrs ..........................................~~(,_,"> 6.52/9.25 hrs ..........................................~~(,_,"> 6.52/9.24 hrs ..........................................~~(,_,"> 6.53/9.24 hrs ..........................................~~(,_,"> 6.54/9.23 hrs ..........................................~~(,_,"> 6.55/9.24 hrs ..........................................~~(,_,"> 6.56/9.24 hrs ..........................................~~(,_,"> 6.57/9.23 hrs ..........................................~~(,_,"> 6.58/9.23 hrs ..........................................~~(,_,"> 6.60/9.24 hrs ..........................................~~(,_,"> 6.61/9.23 hrs ..........................................~~(,_,"> 6.61/9.23 hrs ..........................................~~(,_,"> 6.62/9.22 hrs ...........................................~~(,_,"> 6.63/9.22 hrs ...........................................~~(,_,"> 6.63/9.21 hrs ...........................................~~(,_,"> 6.64/9.20 hrs ...........................................~~(,_,"> 6.65/9.20 hrs ...........................................~~(,_,"> 6.66/9.20 hrs ...........................................~~(,_,"> 6.67/9.20 hrs ...........................................~~(,_,"> 6.68/9.20 hrs ...........................................~~(,_,"> 6.69/9.20 hrs ...........................................~~(,_,"> 6.70/9.21 hrs ...........................................~~(,_,"> 6.72/9.21 hrs ...........................................~~(,_,"> 6.73/9.21 hrs ...........................................~~(,_,"> 6.73/9.20 hrs ...........................................~~(,_,"> 6.75/9.21 hrs ...........................................~~(,_,"> 6.76/9.20 hrs ............................................~~(,_,"> 6.76/9.20 hrs ............................................~~(,_,"> 6.78/9.20 hrs ............................................~~(,_,"> 6.79/9.20 hrs ............................................~~(,_,"> 6.80/9.21 hrs ............................................~~(,_,"> 6.81/9.21 hrs ............................................~~(,_,"> 6.82/9.20 hrs ............................................~~(,_,"> 6.83/9.20 hrs ............................................~~(,_,"> 6.84/9.19 hrs ............................................~~(,_,"> 6.84/9.19 hrs ............................................~~(,_,"> 6.85/9.18 hrs ............................................~~(,_,"> 6.85/9.18 hrs ............................................~~(,_,"> 6.86/9.17 hrs ............................................~~(,_,"> 6.87/9.17 hrs ............................................~~(,_,"> 6.88/9.17 hrs .............................................~~(,_,"> 6.89/9.17 hrs .............................................~~(,_,"> 6.90/9.17 hrs .............................................~~(,_,"> 6.92/9.17 hrs .............................................~~(,_,"> 6.93/9.17 hrs .............................................~~(,_,"> 6.94/9.17 hrs .............................................~~(,_,"> 6.95/9.17 hrs .............................................~~(,_,"> 6.96/9.17 hrs .............................................~~(,_,"> 6.97/9.17 hrs .............................................~~(,_,"> 6.99/9.18 hrs .............................................~~(,_,"> 7.00/9.18 hrs .............................................~~(,_,"> 7.01/9.18 hrs .............................................~~(,_,"> 7.02/9.19 hrs .............................................~~(,_,"> 7.03/9.18 hrs .............................................~~(,_,"> 7.04/9.18 hrs ..............................................~~(,_,"> 7.05/9.18 hrs ..............................................~~(,_,"> 7.06/9.18 hrs ..............................................~~(,_,"> 7.07/9.17 hrs ..............................................~~(,_,"> 7.08/9.17 hrs ..............................................~~(,_,"> 7.09/9.17 hrs ..............................................~~(,_,"> 7.10/9.17 hrs ..............................................~~(,_,"> 7.11/9.18 hrs ..............................................~~(,_,"> 7.12/9.18 hrs ..............................................~~(,_,"> 7.13/9.17 hrs ..............................................~~(,_,"> 7.14/9.17 hrs ..............................................~~(,_,"> 7.15/9.16 hrs ..............................................~~(,_,"> 7.15/9.16 hrs ..............................................~~(,_,"> 7.16/9.15 hrs ..............................................~~(,_,"> 7.16/9.14 hrs ...............................................~~(,_,"> 7.17/9.14 hrs ...............................................~~(,_,"> 7.18/9.14 hrs ...............................................~~(,_,"> 7.19/9.14 hrs ...............................................~~(,_,"> 7.20/9.14 hrs ...............................................~~(,_,"> 7.21/9.13 hrs ...............................................~~(,_,"> 7.22/9.13 hrs ...............................................~~(,_,"> 7.22/9.12 hrs ...............................................~~(,_,"> 7.23/9.12 hrs ...............................................~~(,_,"> 7.24/9.12 hrs ...............................................~~(,_,"> 7.25/9.11 hrs ...............................................~~(,_,"> 7.26/9.11 hrs ...............................................~~(,_,"> 7.27/9.11 hrs ...............................................~~(,_,"> 7.27/9.10 hrs ...............................................~~(,_,"> 7.28/9.10 hrs ................................................~~(,_,"> 7.29/9.10 hrs ................................................~~(,_,"> 7.30/9.10 hrs ................................................~~(,_,"> 7.31/9.09 hrs ................................................~~(,_,"> 7.31/9.09 hrs ................................................~~(,_,"> 7.32/9.09 hrs ................................................~~(,_,"> 7.33/9.08 hrs ................................................~~(,_,"> 7.34/9.08 hrs ................................................~~(,_,"> 7.35/9.08 hrs ................................................~~(,_,"> 7.35/9.07 hrs ................................................~~(,_,"> 7.36/9.07 hrs ................................................~~(,_,"> 7.36/9.06 hrs ................................................~~(,_,"> 7.37/9.05 hrs ................................................~~(,_,"> 7.38/9.05 hrs ................................................~~(,_,"> 7.39/9.05 hrs ................................................~~(,_,"> 7.40/9.05 hrs .................................................~~(,_,"> 7.41/9.05 hrs .................................................~~(,_,"> 7.42/9.05 hrs .................................................~~(,_,"> 7.42/9.04 hrs .................................................~~(,_,"> 7.43/9.04 hrs .................................................~~(,_,"> 7.44/9.03 hrs .................................................~~(,_,"> 7.44/9.03 hrs .................................................~~(,_,"> 7.46/9.03 hrs .................................................~~(,_,"> 7.46/9.03 hrs .................................................~~(,_,"> 7.47/9.02 hrs .................................................~~(,_,"> 7.48/9.02 hrs .................................................~~(,_,"> 7.48/9.01 hrs .................................................~~(,_,"> 7.49/9.00 hrs .................................................~~(,_,"> 7.49/9.00 hrs .................................................~~(,_,"> 7.50/8.99 hrs ..................................................~~(,_,"> 7.50/8.98 hrs ..................................................~~(,_,"> 7.51/8.98 hrs ..................................................~~(,_,"> 7.52/8.97 hrs ..................................................~~(,_,"> 7.53/8.97 hrs ..................................................~~(,_,"> 7.54/8.97 hrs ..................................................~~(,_,"> 7.55/8.97 hrs ..................................................~~(,_,"> 7.55/8.97 hrs ..................................................~~(,_,"> 7.56/8.96 hrs ..................................................~~(,_,"> 7.57/8.96 hrs ..................................................~~(,_,"> 7.58/8.96 hrs ..................................................~~(,_,"> 7.59/8.96 hrs ..................................................~~(,_,"> 7.60/8.95 hrs ..................................................~~(,_,"> 7.61/8.96 hrs ..................................................~~(,_,"> 7.61/8.95 hrs ...................................................~~(,_,"> 7.62/8.95 hrs ...................................................~~(,_,"> 7.63/8.94 hrs ...................................................~~(,_,"> 7.63/8.94 hrs ...................................................~~(,_,"> 7.64/8.93 hrs ...................................................~~(,_,"> 7.65/8.93 hrs ...................................................~~(,_,"> 7.65/8.92 hrs ...................................................~~(,_,"> 7.66/8.92 hrs ...................................................~~(,_,"> 7.66/8.91 hrs ...................................................~~(,_,"> 7.67/8.91 hrs ...................................................~~(,_,"> 7.68/8.90 hrs ...................................................~~(,_,"> 7.69/8.90 hrs ...................................................~~(,_,"> 7.70/8.90 hrs ...................................................~~(,_,"> 7.71/8.90 hrs ...................................................~~(,_,"> 7.72/8.90 hrs ....................................................~~(,_,"> 7.73/8.90 hrs ....................................................~~(,_,"> 7.74/8.90 hrs ....................................................~~(,_,"> 7.75/8.90 hrs ....................................................~~(,_,"> 7.76/8.90 hrs ....................................................~~(,_,"> 7.77/8.90 hrs ....................................................~~(,_,"> 7.78/8.90 hrs ....................................................~~(,_,"> 7.79/8.90 hrs ....................................................~~(,_,"> 7.80/8.90 hrs ....................................................~~(,_,"> 7.81/8.90 hrs ....................................................~~(,_,"> 7.82/8.90 hrs ....................................................~~(,_,"> 7.84/8.91 hrs ....................................................~~(,_,"> 7.85/8.90 hrs ....................................................~~(,_,"> 7.86/8.90 hrs ....................................................~~(,_,"> 7.86/8.90 hrs .....................................................~~(,_,"> 7.87/8.89 hrs .....................................................~~(,_,"> 7.87/8.89 hrs .....................................................~~(,_,"> 7.88/8.88 hrs .....................................................~~(,_,"> 7.89/8.88 hrs .....................................................~~(,_,"> 7.90/8.88 hrs .....................................................~~(,_,"> 7.90/8.88 hrs .....................................................~~(,_,"> 7.91/8.87 hrs .....................................................~~(,_,"> 7.92/8.87 hrs .....................................................~~(,_,"> 7.93/8.87 hrs .....................................................~~(,_,"> 7.94/8.87 hrs .....................................................~~(,_,"> 7.95/8.87 hrs .....................................................~~(,_,"> 7.96/8.87 hrs .....................................................~~(,_,"> 7.97/8.87 hrs .....................................................~~(,_,"> 7.98/8.87 hrs ......................................................~~(,_,"> 7.99/8.87 hrs ......................................................~~(,_,"> 8.00/8.87 hrs ......................................................~~(,_,"> 8.01/8.87 hrs ......................................................~~(,_,"> 8.02/8.87 hrs ......................................................~~(,_,"> 8.03/8.86 hrs ......................................................~~(,_,"> 8.04/8.86 hrs ......................................................~~(,_,"> 8.05/8.86 hrs ......................................................~~(,_,"> 8.06/8.86 hrs ......................................................~~(,_,"> 8.07/8.86 hrs ......................................................~~(,_,"> 8.08/8.86 hrs ......................................................~~(,_,"> 8.09/8.86 hrs ......................................................~~(,_,"> 8.11/8.87 hrs ......................................................~~(,_,"> 8.11/8.87 hrs ......................................................~~(,_,"> 8.12/8.86 hrs ......................................................~~(,_,"> 8.13/8.86 hrs .......................................................~~(,_,"> 8.14/8.86 hrs .......................................................~~(,_,"> 8.16/8.87 hrs .......................................................~~(,_,"> 8.17/8.87 hrs .......................................................~~(,_,"> 8.18/8.87 hrs .......................................................~~(,_,"> 8.19/8.87 hrs .......................................................~~(,_,"> 8.20/8.87 hrs .......................................................~~(,_,"> 8.22/8.88 hrs .......................................................~~(,_,"> 8.23/8.88 hrs .......................................................~~(,_,"> 8.24/8.87 hrs .......................................................~~(,_,"> 8.25/8.87 hrs .......................................................~~(,_,"> 8.26/8.87 hrs .......................................................~~(,_,"> 8.27/8.87 hrs .......................................................~~(,_,"> 8.27/8.87 hrs .......................................................~~(,_,"> 8.28/8.86 hrs ........................................................~~(,_,"> 8.29/8.86 hrs ........................................................~~(,_,"> 8.30/8.87 hrs ........................................................~~(,_,"> 8.32/8.87 hrs ........................................................~~(,_,"> 8.33/8.87 hrs ........................................................~~(,_,"> 8.34/8.87 hrs ........................................................~~(,_,"> 8.34/8.87 hrs ........................................................~~(,_,"> 8.35/8.87 hrs ........................................................~~(,_,"> 8.36/8.87 hrs ........................................................~~(,_,"> 8.38/8.87 hrs ........................................................~~(,_,"> 8.39/8.87 hrs ........................................................~~(,_,"> 8.40/8.87 hrs ........................................................~~(,_,"> 8.41/8.87 hrs ........................................................~~(,_,"> 8.43/8.88 hrs ........................................................~~(,_,"> 8.44/8.88 hrs .........................................................~~(,_,"> 8.45/8.88 hrs .........................................................~~(,_,"> 8.46/8.88 hrs .........................................................~~(,_,"> 8.47/8.87 hrs .........................................................~~(,_,"> 8.48/8.87 hrs .........................................................~~(,_,"> 8.49/8.87 hrs .........................................................~~(,_,"> 8.50/8.87 hrs .........................................................~~(,_,"> 8.51/8.87 hrs .........................................................~~(,_,"> 8.52/8.87 hrs .........................................................~~(,_,"> 8.53/8.87 hrs .........................................................~~(,_,"> 8.54/8.87 hrs .........................................................~~(,_,"> 8.54/8.87 hrs .........................................................~~(,_,"> 8.55/8.87 hrs .........................................................~~(,_,"> 8.56/8.86 hrs .........................................................~~(,_,"> 8.57/8.86 hrs ..........................................................~~(,_,"> 8.58/8.86 hrs ..........................................................~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 2 with PID 41956 on node perk exited on signal 7 (Bus error). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = perk + Slave 1 runs on host = perk + Slave 2 runs on host = perk + Slave 3 runs on host = perk ================= + Reading Refine3D/job249/run_data.star... + Using movie pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.5685 A + Using coord. pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 1.137 A + Using dose per frame from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.944055 e/A^2 - Will only estimate motion for 338 unfinished micrographs - Will recombine frames for all 3400 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job249/run_half1_class001_unfil.mrc - Half map 2: Refine3D/job249/run_half2_class001_unfil.mrc - Mask: MaskCreate/job255/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.28/24.08 min ~~(,_,"> 0.60/25.50 min .~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 1 with PID 4825 on node perk exited on signal 7 (Bus error). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = perk + Slave 1 runs on host = perk + Slave 2 runs on host = perk + Slave 3 runs on host = perk ================= + Reading Refine3D/job249/run_data.star... + Using movie pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.5685 A + Using coord. pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 1.137 A + Using dose per frame from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.944055 e/A^2 - Will only estimate motion for 335 unfinished micrographs - Will recombine frames for all 3400 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job249/run_half1_class001_unfil.mrc - Half map 2: Refine3D/job249/run_half2_class001_unfil.mrc - Mask: MaskCreate/job255/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.47/39.20 min ~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 1 with PID 48662 on node perk exited on signal 7 (Bus error). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = perk + Slave 1 runs on host = perk + Slave 2 runs on host = perk + Slave 3 runs on host = perk ================= + Reading Refine3D/job249/run_data.star... + Using movie pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.5685 A + Using coord. pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 1.137 A + Using dose per frame from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.944055 e/A^2 - Will only estimate motion for 333 unfinished micrographs - Will recombine frames for all 3400 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job249/run_half1_class001_unfil.mrc - Half map 2: Refine3D/job249/run_half2_class001_unfil.mrc - Mask: MaskCreate/job255/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.42/35.00 min ~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 1 with PID 92982 on node perk exited on signal 7 (Bus error). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = perk + Slave 1 runs on host = perk + Slave 2 runs on host = perk + Slave 3 runs on host = perk ================= + Reading Refine3D/job249/run_data.star... + Using movie pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.5685 A + Using coord. pixel size from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 1.137 A + Using dose per frame from MotionCorr/job002/Frames/20Apr23_3A-C-4_122-11_0001.star: 0.944055 e/A^2 - Will only estimate motion for 331 unfinished micrographs - Will recombine frames for all 3400 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job249/run_half1_class001_unfil.mrc - Half map 2: Refine3D/job249/run_half2_class001_unfil.mrc - Mask: MaskCreate/job255/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.37/30.43 min ~~(,_,"> 0.75/31.12 min .~~(,_,"> 1.13/31.35 min ..~~(,_,"> 1.47/30.43 min ..~~(,_,"> 1.80/29.87 min ...~~(,_,"> 2.07/28.58 min ....~~(,_,"> 2.38/28.25 min .....~~(,_,"> 2.73/28.35 min .....~~(,_,"> 3.13/28.88 min ......~~(,_,"> 3.45/28.63 min .......~~(,_,"> 3.80/28.67 min .......~~(,_,"> 4.22/29.15 min ........~~(,_,"> 4.55/29.05 min .........~~(,_,"> 4.88/28.95 min ..........~~(,_,"> 5.27/29.13 min ..........~~(,_,"> 5.55/28.78 min ...........~~(,_,"> 5.82/28.38 min ............~~(,_,"> 6.08/28.05 min .............~~(,_,"> 6.43/28.10 min .............~~(,_,"> 6.70/27.80 min ..............~~(,_,"> 6.92/27.33 min ...............~~(,_,"> 7.23/27.28 min ...............~~(,_,"> 7.52/27.12 min ................~~(,_,"> 8.78/30.37 min .................~~(,_,"> 9.65/32.03 min ..................~~(,_,"> 10.82/34.52 min ..................~~(,_,"> 11.88/36.52 min ...................~~(,_,"> 12.88/38.18 min ....................~~(,_,"> 13.98/40.02 min ....................~~(,_,"> 15.12/41.82 min .....................~~(,_,"> 16.13/43.18 min ......................~~(,_,"> 17.20/44.60 min .......................~~(,_,"> 18.42/46.32 min .......................~~(,_,"> 19.33/47.18 min ........................~~(,_,"> 20.20/47.90 min .........................~~(,_,"> 21.28/49.07 min ..........................~~(,_,"> 22.38/50.20 min ..........................~~(,_,"> 23.28/50.85 min ...........................~~(,_,"> 24.48/52.10 min ............................~~(,_,"> 25.77/53.45 min ............................~~(,_,"> 26.80/54.25 min .............................~~(,_,"> 27.65/54.63 min ..............................~~(,_,"> 28.70/55.38 min ...............................~~(,_,"> 29.87/56.33 min ...............................~~(,_,"> 30.82/56.83 min ................................~~(,_,"> 31.77/57.32 min .................................~~(,_,"> 32.50/57.38 min .................................~~(,_,"> 33.05/57.13 min ..................................~~(,_,"> 34.02/57.62 min ...................................~~(,_,"> 35.03/58.15 min ....................................~~(,_,"> 35.90/58.42 min ....................................~~(,_,"> 36.82/58.75 min .....................................~~(,_,"> 37.70/59.03 min ......................................~~(,_,"> 38.48/59.15 min .......................................~~(,_,"> 39.17/59.10 min .......................................~~(,_,"> 40.05/59.35 min ........................................~~(,_,"> 40.95/59.62 min .........................................~~(,_,"> 41.87/59.90 min .........................................~~(,_,"> 0.71/1.00 hrs ..........................................~~(,_,"> 0.73/1.01 hrs ...........................................~~(,_,"> 0.74/1.01 hrs ............................................~~(,_,"> 0.76/1.01 hrs ............................................~~(,_,"> 0.77/1.02 hrs .............................................~~(,_,"> 0.79/1.02 hrs ..............................................~~(,_,"> 0.81/1.03 hrs ..............................................~~(,_,"> 0.82/1.03 hrs ...............................................~~(,_,"> 0.84/1.04 hrs ................................................~~(,_,"> 0.85/1.03 hrs .................................................~~(,_,"> 0.86/1.03 hrs .................................................~~(,_,"> 0.88/1.04 hrs ..................................................~~(,_,"> 0.89/1.04 hrs ...................................................~~(,_,"> 0.90/1.04 hrs ....................................................~~(,_,"> 0.91/1.04 hrs ....................................................~~(,_,"> 0.93/1.04 hrs .....................................................~~(,_,"> 0.94/1.04 hrs ......................................................~~(,_,"> 0.96/1.04 hrs ......................................................~~(,_,"> 0.97/1.04 hrs .......................................................~~(,_,"> 0.98/1.05 hrs ........................................................~~(,_,"> 1.00/1.05 hrs .........................................................~~(,_,"> 1.01/1.05 hrs .........................................................~~(,_,"> 1.03/1.05 hrs ..........................................................~~(,_,"> 1.03/1.05 hrs ...........................................................~~(,_,"> 1.05/1.05 hrs ............................................................~~(,_,"> + Fitting B/k-factors for optics-group-1 using FCCs from all particles between 14 and 69 pixels, or 20 and 4.21843 Angstrom ... + Combining frames for all micrographs ... 000/??? sec ~~(,_,"> [oo] 0.09/5.60 hrs ~~(,_,"> 0.20/6.02 hrs .~~(,_,"> 0.30/6.16 hrs ..~~(,_,"> 0.44/6.72 hrs ...~~(,_,"> 0.58/7.08 hrs ....~~(,_,"> 0.74/7.45 hrs .....~~(,_,"> 0.87/7.56 hrs ......~~(,_,"> 1.02/7.72 hrs .......~~(,_,"> 1.16/7.83 hrs ........~~(,_,"> 1.30/7.92 hrs .........~~(,_,"> 1.44/7.97 hrs ..........~~(,_,"> 1.59/8.04 hrs ...........~~(,_,"> 1.75/8.17 hrs ............~~(,_,"> 1.90/8.25 hrs .............~~(,_,"> 2.05/8.31 hrs ..............~~(,_,"> 2.21/8.40 hrs ...............~~(,_,"> 2.36/8.42 hrs ................~~(,_,"> 2.49/8.39 hrs .................~~(,_,"> 2.61/8.33 hrs ..................~~(,_,"> 2.72/8.25 hrs ...................~~(,_,"> 2.82/8.16 hrs ....................~~(,_,"> 2.94/8.12 hrs .....................~~(,_,"> 3.06/8.08 hrs ......................~~(,_,"> 3.18/8.05 hrs .......................~~(,_,"> 3.29/7.98 hrs ........................~~(,_,"> 3.39/7.93 hrs .........................~~(,_,"> 3.50/7.87 hrs ..........................~~(,_,"> 3.62/7.84 hrs ...........................~~(,_,"> 3.73/7.80 hrs ............................~~(,_,"> 3.84/7.77 hrs .............................~~(,_,"> 3.95/7.74 hrs ..............................~~(,_,"> 4.05/7.69 hrs ...............................~~(,_,"> 4.16/7.66 hrs ................................~~(,_,"> 4.28/7.64 hrs .................................~~(,_,"> 4.39/7.61 hrs ..................................~~(,_,"> 4.50/7.59 hrs ...................................~~(,_,"> 4.61/7.57 hrs ....................................~~(,_,"> 4.73/7.56 hrs .....................................~~(,_,"> 4.84/7.54 hrs ......................................~~(,_,"> 4.94/7.50 hrs .......................................~~(,_,"> 5.04/7.46 hrs ........................................~~(,_,"> 5.14/7.43 hrs .........................................~~(,_,"> 5.24/7.40 hrs ..........................................~~(,_,"> 5.35/7.38 hrs ...........................................~~(,_,"> 5.46/7.37 hrs ............................................~~(,_,"> 5.57/7.35 hrs .............................................~~(,_,"> 5.69/7.34 hrs ..............................................~~(,_,"> 5.79/7.32 hrs ...............................................~~(,_,"> 5.88/7.29 hrs ................................................~~(,_,"> 5.99/7.27 hrs .................................................~~(,_,"> 6.09/7.25 hrs ..................................................~~(,_,"> 6.19/7.23 hrs ...................................................~~(,_,"> 6.30/7.21 hrs ....................................................~~(,_,"> 6.40/7.20 hrs .....................................................~~(,_,"> 6.52/7.20 hrs ......................................................~~(,_,"> 6.64/7.19 hrs .......................................................~~(,_,"> 6.75/7.19 hrs ........................................................~~(,_,"> 6.86/7.18 hrs .........................................................~~(,_,"> 6.97/7.17 hrs ..........................................................~~(,_,"> 7.09/7.17 hrs ...........................................................~~(,_,"> 7.17/7.17 hrs ............................................................~~(,_,"> + Combining all EPS and STAR files ... + Pixel size for optics group 1: 1.137 + Done! + Written logfile in Polish/job268/logfile.pdf + Written new particle STAR file in Polish/job268/shiny.star