*** Entries to program alignframes ***
  InputFile = 541_002.tif
  OutputImageFile = W:/Modis_02July2018/images/541_002_ali.mrc
  AlignAndSumBinning = 4 1
  ScalingOfSum = 12.225000
  GainReferenceFile = CountRef_58-4_001.dm4
  RotationAndFlip = -1
  CameraDefectFile = defects_455_001.txt
  PairwiseFrames = 40
  ShiftLimit = 20
  GroupSize = 1
  FilterRadius2 = 0.060000
  VaryFilter = 0.060000
  RefineAlignment = 5
  StopIterationsAtShift = 0.100000
  RefineRadius2 = 0.060000
  MinForSplineSmoothing = 0
  UseGPU = 0
  AntialiasFilter = 4
  FilterSigma2 = 0.008574
*** End of entries ***

Assuming binning of 1.0 instead of a small subarea;
    use the -imagebinned option to set a binning if this is incorrect.
File 1 (541_002.tif): 40 frames
  Weighted residual mean = 0.644, SD = 0.309, mean max = 1.09, max max = 1.09
  Max unweighted resid mean = 7.08, max = 7.08   Dist = 15.48, smoothed = 11.77
SUCCESSFULLY COMPLETED