*** Entries to program alignframes ***
  InputFile = 689_003.tif
  OutputImageFile = W:/Modis_02July2018/images/689_003_ali.mrc
  AlignAndSumBinning = 4 1
  ScalingOfSum = 12.225000
  GainReferenceFile = CountRef_58-4_001.dm4
  RotationAndFlip = -1
  CameraDefectFile = defects_455_001.txt
  PairwiseFrames = 40
  ShiftLimit = 20
  GroupSize = 1
  FilterRadius2 = 0.060000
  VaryFilter = 0.060000
  RefineAlignment = 5
  StopIterationsAtShift = 0.100000
  RefineRadius2 = 0.060000
  MinForSplineSmoothing = 0
  UseGPU = 0
  AntialiasFilter = 4
  FilterSigma2 = 0.008574
*** End of entries ***

Assuming binning of 1.0 instead of a small subarea;
    use the -imagebinned option to set a binning if this is incorrect.
File 1 (689_003.tif): 40 frames
  Weighted residual mean = 0.538, SD = 0.235, mean max = 0.87, max max = 0.87
  Max unweighted resid mean = 2.42, max = 2.42   Dist = 9.92, smoothed = 4.83
SUCCESSFULLY COMPLETED