*** Entries to program alignframes ***
  InputFile = 85-63_004.tif
  OutputImageFile = W:/Modis_02July2018/images/85-63_004_ali.mrc
  AlignAndSumBinning = 4 1
  ScalingOfSum = 12.225000
  GainReferenceFile = CountRef_58-4_001.dm4
  RotationAndFlip = -1
  CameraDefectFile = defects_64-104_001.txt
  PairwiseFrames = 40
  ShiftLimit = 20
  GroupSize = 1
  FilterRadius2 = 0.060000
  VaryFilter = 0.060000
  RefineAlignment = 5
  StopIterationsAtShift = 0.100000
  RefineRadius2 = 0.060000
  MinForSplineSmoothing = 0
  UseGPU = 0
  AntialiasFilter = 4
  FilterSigma2 = 0.008574
*** End of entries ***

Assuming binning of 1.0 instead of a small subarea;
    use the -imagebinned option to set a binning if this is incorrect.
File 1 (85-63_004.tif): 40 frames
  Weighted residual mean = 0.650, SD = 0.325, mean max = 1.12, max max = 1.12
  Max unweighted resid mean = 6.06, max = 6.06   Dist = 14.50, smoothed = 9.39
 FRC crossings 0.5: 0.0065  0.25: 0.0572  0.125: 0.0635  is 0.0573 at 0.25/pix
SUCCESSFULLY COMPLETED