=== RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu + Slave 3 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.02/17.91 hrs ~~(,_,"> 0.04/14.72 hrs ~~(,_,"> 0.05/12.49 hrs ~~(,_,"> 0.06/11.06 hrs ~~(,_,"> 0.08/11.73 hrs ~~(,_,"> 0.09/10.84 hrs ~~(,_,"> 0.10/10.53 hrs ~~(,_,"> 0.12/10.86 hrs ~~(,_,"> 0.14/11.34 hrs ~~(,_,"> 0.16/11.69 hrs ~~(,_,"> 0.17/11.64 hrs ~~(,_,"> 0.18/11.34 hrs ~~(,_,"> 0.19/11.07 hrs .~~(,_,"> 0.22/11.42 hrs .~~(,_,"> 0.23/11.39 hrs .~~(,_,"> 0.25/11.80 hrs .~~(,_,"> 0.28/12.16 hrs .~~(,_,"> 0.30/12.42 hrs .~~(,_,"> 0.32/12.44 hrs .~~(,_,"> 0.34/12.44 hrs .~~(,_,"> 0.35/12.22 hrs .~~(,_,"> 0.36/12.26 hrs .~~(,_,"> 0.38/12.33 hrs .~~(,_,"> 0.40/12.37 hrs .~~(,_,"> 0.42/12.34 hrs ..~~(,_,"> 0.44/12.48 hrs ..~~(,_,"> 0.45/12.47 hrs ..~~(,_,"> 0.47/12.49 hrs ..~~(,_,"> 0.48/12.24 hrs ..~~(,_,"> 0.50/12.24 hrs ..~~(,_,"> 0.52/12.40 hrs ..~~(,_,"> 0.54/12.57 hrs ..~~(,_,"> 0.56/12.49 hrs ..~~(,_,"> 0.57/12.49 hrs ..~~(,_,"> 0.59/12.56 hrs ..~~(,_,"> 0.62/12.70 hrs ..~~(,_,"> 0.64/12.74 hrs ..~~(,_,"> 0.66/12.89 hrs ...~~(,_,"> 0.68/12.91 hrs ...~~(,_,"> 0.71/13.16 hrs ...~~(,_,"> 0.73/13.19 hrs ...~~(,_,"> 0.75/13.23 hrs ...~~(,_,"> 0.77/13.31 hrs ...~~(,_,"> 0.79/13.31 hrs ...~~(,_,"> 0.80/13.25 hrs ...~~(,_,"> 0.83/13.34 hrs ...~~(,_,"> 0.86/13.54 hrs ...~~(,_,"> 0.89/13.74 hrs ...~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 2 with PID 62509 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu + Slave 3 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 2853 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.04/25.78 hrs ~~(,_,"> 0.07/25.98 hrs ~~(,_,"> 0.10/22.68 hrs ~~(,_,"> 0.13/22.86 hrs ~~(,_,"> 0.16/22.53 hrs ~~(,_,"> 0.19/22.48 hrs ~~(,_,"> 0.21/21.28 hrs ~~(,_,"> 0.24/21.74 hrs ~~(,_,"> 0.27/21.49 hrs ~~(,_,"> 0.30/21.74 hrs ~~(,_,"> 0.33/21.22 hrs ~~(,_,"> 0.35/21.02 hrs .~~(,_,"> 0.38/20.83 hrs .~~(,_,"> 0.40/20.53 hrs .~~(,_,"> 0.44/20.80 hrs .~~(,_,"> 0.46/20.35 hrs .~~(,_,"> 0.49/20.37 hrs .~~(,_,"> 0.51/20.23 hrs .~~(,_,"> 0.53/19.95 hrs .~~(,_,"> 0.56/20.12 hrs .~~(,_,"> 0.59/19.92 hrs .~~(,_,"> 0.62/20.02 hrs .~~(,_,"> 0.65/20.22 hrs .~~(,_,"> 0.68/20.26 hrs ..~~(,_,"> 0.71/20.33 hrs ..~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 2 with PID 7871 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 3 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 2786 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.03/26.58 hrs ~~(,_,"> 0.05/24.64 hrs ~~(,_,"> 0.07/21.68 hrs ~~(,_,"> 0.09/21.74 hrs ~~(,_,"> 0.11/20.85 hrs ~~(,_,"> 0.14/21.20 hrs ~~(,_,"> 0.16/20.83 hrs ~~(,_,"> 0.19/21.64 hrs ~~(,_,"> 0.21/21.76 hrs ~~(,_,"> 0.23/21.83 hrs ~~(,_,"> 0.26/22.31 hrs ~~(,_,"> 0.28/21.76 hrs ~~(,_,"> 0.30/21.34 hrs ~~(,_,"> 0.32/21.46 hrs ~~(,_,"> 0.34/20.97 hrs ~~(,_,"> 0.35/20.56 hrs .~~(,_,"> 0.37/20.43 hrs .~~(,_,"> 0.39/20.13 hrs .~~(,_,"> 0.41/19.90 hrs .~~(,_,"> 0.42/19.60 hrs .~~(,_,"> 0.44/19.34 hrs .~~(,_,"> 0.45/18.83 hrs .~~(,_,"> 0.47/18.97 hrs .~~(,_,"> 0.48/18.62 hrs .~~(,_,"> 0.51/19.02 hrs .~~(,_,"> 0.53/18.97 hrs .~~(,_,"> 0.55/19.08 hrs .~~(,_,"> 0.57/18.91 hrs .~~(,_,"> 0.59/18.95 hrs .~~(,_,"> 0.61/19.01 hrs .~~(,_,"> 0.64/19.27 hrs ..~~(,_,"> 0.67/19.33 hrs ..~~(,_,"> 0.70/19.64 hrs ..~~(,_,"> 0.71/19.47 hrs ..~~(,_,"> 0.74/19.64 hrs ..~~(,_,"> 0.76/19.64 hrs ..~~(,_,"> 0.78/19.70 hrs ..~~(,_,"> 0.79/19.42 hrs ..~~(,_,"> 0.82/19.45 hrs ..~~(,_,"> 0.84/19.43 hrs ..~~(,_,"> 0.87/19.60 hrs ..~~(,_,"> 0.89/19.63 hrs ..~~(,_,"> 0.92/19.85 hrs ..~~(,_,"> 0.95/19.99 hrs ..~~(,_,"> 0.98/20.24 hrs ..~~(,_,"> 1.01/20.34 hrs ..~~(,_,"> 1.03/20.40 hrs ...~~(,_,"> 1.06/20.60 hrs ...~~(,_,"> 1.09/20.67 hrs ...~~(,_,"> 1.12/20.88 hrs ...~~(,_,"> 1.16/21.08 hrs ...~~(,_,"> 1.18/21.16 hrs ...~~(,_,"> 1.21/21.27 hrs ...~~(,_,"> 1.24/21.39 hrs ...~~(,_,"> 1.27/21.47 hrs ...~~(,_,"> 1.30/21.58 hrs ...~~(,_,"> 1.32/21.57 hrs ...~~(,_,"> 1.36/21.75 hrs ...~~(,_,"> 1.38/21.75 hrs ...~~(,_,"> 1.40/21.68 hrs ...~~(,_,"> 1.43/21.73 hrs ...~~(,_,"> 1.46/21.92 hrs ....~~(,_,"> 1.50/22.16 hrs ....~~(,_,"> 1.54/22.37 hrs ....~~(,_,"> 1.56/22.25 hrs ....~~(,_,"> 1.56/22.02 hrs ....~~(,_,"> 1.60/22.19 hrs ....~~(,_,"> 1.63/22.31 hrs ....~~(,_,"> 1.66/22.37 hrs ....~~(,_,"> 1.70/22.50 hrs ....~~(,_,"> 1.73/22.67 hrs ....~~(,_,"> 1.76/22.70 hrs ....~~(,_,"> 1.80/22.91 hrs ....~~(,_,"> 1.83/23.01 hrs ....~~(,_,"> 1.86/23.05 hrs ....~~(,_,"> 1.90/23.28 hrs ....~~(,_,"> 1.95/23.48 hrs ....~~(,_,"> 1.98/23.57 hrs .....~~(,_,"> 2.01/23.66 hrs .....~~(,_,"> 2.05/23.75 hrs .....~~(,_,"> 2.09/23.92 hrs .....~~(,_,"> 2.12/24.07 hrs .....~~(,_,"> 2.16/24.18 hrs .....~~(,_,"> 2.20/24.32 hrs .....~~(,_,"> 2.24/24.47 hrs .....~~(,_,"> 2.28/24.58 hrs .....~~(,_,"> 2.31/24.65 hrs .....~~(,_,"> 2.34/24.73 hrs .....~~(,_,"> 2.38/24.83 hrs .....~~(,_,"> 2.41/24.90 hrs .....~~(,_,"> 2.43/24.81 hrs .....~~(,_,"> 2.46/24.79 hrs .....~~(,_,"> 2.48/24.78 hrs ......~~(,_,"> 2.52/24.89 hrs ......~~(,_,"> 2.55/24.90 hrs ......~~(,_,"> 2.58/24.93 hrs ......~~(,_,"> 2.60/24.92 hrs ......~~(,_,"> 2.63/24.92 hrs ......~~(,_,"> 2.66/24.99 hrs ......~~(,_,"> 2.70/25.10 hrs ......~~(,_,"> 2.74/25.17 hrs ......~~(,_,"> 2.76/25.14 hrs ......~~(,_,"> 2.79/25.18 hrs ......~~(,_,"> 2.83/25.24 hrs ......~~(,_,"> 2.86/25.33 hrs ......~~(,_,"> 2.88/25.22 hrs ......~~(,_,"> 2.91/25.22 hrs ......~~(,_,"> 2.93/25.20 hrs ......~~(,_,"> 2.96/25.23 hrs .......~~(,_,"> 2.98/25.20 hrs .......~~(,_,"> 3.01/25.15 hrs .......~~(,_,"> 3.03/25.16 hrs .......~~(,_,"> 3.06/25.16 hrs .......~~(,_,"> 3.09/25.17 hrs .......~~(,_,"> 3.12/25.20 hrs .......~~(,_,"> 3.14/25.17 hrs .......~~(,_,"> 3.17/25.16 hrs .......~~(,_,"> 3.19/25.11 hrs .......~~(,_,"> 3.21/25.03 hrs .......~~(,_,"> 3.23/24.99 hrs .......~~(,_,"> 3.26/25.02 hrs .......~~(,_,"> 3.29/25.06 hrs .......~~(,_,"> 3.32/25.07 hrs .......~~(,_,"> 3.35/25.06 hrs ........~~(,_,"> 3.38/25.12 hrs ........~~(,_,"> 3.41/25.18 hrs ........~~(,_,"> 3.45/25.23 hrs ........~~(,_,"> 3.48/25.23 hrs ........~~(,_,"> 3.51/25.29 hrs ........~~(,_,"> 3.54/25.32 hrs ........~~(,_,"> 3.58/25.36 hrs ........~~(,_,"> 3.61/25.42 hrs ........~~(,_,"> 3.65/25.46 hrs ........~~(,_,"> 3.68/25.51 hrs ........~~(,_,"> 3.71/25.51 hrs ........~~(,_,"> 3.74/25.56 hrs ........~~(,_,"> 3.77/25.57 hrs ........~~(,_,"> 3.80/25.56 hrs ........~~(,_,"> 3.81/25.50 hrs ........~~(,_,"> 3.84/25.51 hrs .........~~(,_,"> 3.87/25.50 hrs .........~~(,_,"> 3.90/25.51 hrs .........~~(,_,"> 3.93/25.55 hrs .........~~(,_,"> 3.97/25.60 hrs .........~~(,_,"> 4.01/25.68 hrs .........~~(,_,"> 4.04/25.69 hrs .........~~(,_,"> 4.07/25.72 hrs .........~~(,_,"> 4.10/25.75 hrs .........~~(,_,"> 4.13/25.74 hrs .........~~(,_,"> 4.15/25.72 hrs .........~~(,_,"> 4.18/25.74 hrs .........~~(,_,"> 4.22/25.81 hrs .........~~(,_,"> 4.26/25.89 hrs .........~~(,_,"> 4.30/25.96 hrs .........~~(,_,"> 4.34/26.02 hrs ..........~~(,_,"> 4.37/26.04 hrs ..........~~(,_,"> 4.40/26.04 hrs ..........~~(,_,"> 4.43/26.02 hrs ..........~~(,_,"> 4.46/26.05 hrs ..........~~(,_,"> 4.49/26.09 hrs ..........~~(,_,"> 4.53/26.15 hrs ..........~~(,_,"> 4.57/26.21 hrs ..........~~(,_,"> 4.60/26.21 hrs ..........~~(,_,"> 4.63/26.23 hrs ..........~~(,_,"> 4.66/26.25 hrs ..........~~(,_,"> 4.68/26.21 hrs ..........~~(,_,"> 4.71/26.19 hrs ..........~~(,_,"> 4.74/26.22 hrs ..........~~(,_,"> 4.77/26.23 hrs ..........~~(,_,"> 4.81/26.28 hrs ..........~~(,_,"> 4.84/26.32 hrs ...........~~(,_,"> 4.88/26.36 hrs ...........~~(,_,"> 4.90/26.34 hrs ...........~~(,_,"> 4.93/26.31 hrs ...........~~(,_,"> 4.95/26.27 hrs ...........~~(,_,"> 4.98/26.30 hrs ...........~~(,_,"> 5.01/26.29 hrs ...........~~(,_,"> 5.04/26.29 hrs ...........~~(,_,"> 5.08/26.35 hrs ...........~~(,_,"> 5.12/26.40 hrs ...........~~(,_,"> 5.14/26.41 hrs ...........~~(,_,"> 5.18/26.42 hrs ...........~~(,_,"> 5.20/26.41 hrs ...........~~(,_,"> 5.25/26.49 hrs ...........~~(,_,"> 5.29/26.57 hrs ...........~~(,_,"> 5.33/26.61 hrs ............~~(,_,"> 5.36/26.65 hrs ............~~(,_,"> 5.40/26.67 hrs ............~~(,_,"> 5.44/26.72 hrs ............~~(,_,"> 5.48/26.80 hrs ............~~(,_,"> 5.53/26.88 hrs ............~~(,_,"> 5.57/26.96 hrs ............~~(,_,"> 5.62/27.04 hrs ............~~(,_,"> 5.66/27.11 hrs ............~~(,_,"> 5.70/27.15 hrs ............~~(,_,"> 5.73/27.18 hrs ............~~(,_,"> 5.77/27.21 hrs ............~~(,_,"> 5.81/27.28 hrs ............~~(,_,"> 5.84/27.25 hrs ............~~(,_,"> 5.88/27.32 hrs ............~~(,_,"> 5.93/27.39 hrs ............~~(,_,"> 5.97/27.46 hrs .............~~(,_,"> 6.01/27.51 hrs .............~~(,_,"> 6.05/27.56 hrs .............~~(,_,"> 6.07/27.52 hrs .............~~(,_,"> 6.11/27.58 hrs .............~~(,_,"> 6.16/27.63 hrs .............~~(,_,"> 6.20/27.70 hrs .............~~(,_,"> 6.24/27.76 hrs .............~~(,_,"> 6.27/27.72 hrs .............~~(,_,"> 6.29/27.69 hrs .............~~(,_,"> 6.30/27.60 hrs .............~~(,_,"> 6.33/27.59 hrs .............~~(,_,"> 6.34/27.52 hrs .............~~(,_,"> 6.37/27.54 hrs .............~~(,_,"> 6.41/27.58 hrs .............~~(,_,"> 6.46/27.64 hrs ..............~~(,_,"> 6.50/27.71 hrs ..............~~(,_,"> 6.55/27.80 hrs ..............~~(,_,"> 6.57/27.74 hrs ..............~~(,_,"> 6.59/27.69 hrs ..............~~(,_,"> 6.60/27.63 hrs ..............~~(,_,"> 6.62/27.56 hrs ..............~~(,_,"> 6.63/27.50 hrs ..............~~(,_,"> 6.65/27.44 hrs ..............~~(,_,"> 6.65/27.35 hrs ..............~~(,_,"> 6.67/27.29 hrs ..............~~(,_,"> 6.69/27.25 hrs ..............~~(,_,"> 6.70/27.17 hrs ..............~~(,_,"> 6.72/27.12 hrs ..............~~(,_,"> 6.75/27.14 hrs ..............~~(,_,"> 6.79/27.19 hrs ..............~~(,_,"> 6.82/27.18 hrs ...............~~(,_,"> 6.85/27.19 hrs ...............~~(,_,"> 6.87/27.17 hrs ...............~~(,_,"> 6.90/27.18 hrs ...............~~(,_,"> 6.94/27.21 hrs ...............~~(,_,"> 6.97/27.22 hrs ...............~~(,_,"> 7.01/27.27 hrs ...............~~(,_,"> 7.06/27.32 hrs ...............~~(,_,"> 7.10/27.37 hrs ...............~~(,_,"> 7.14/27.43 hrs ...............~~(,_,"> 7.19/27.48 hrs ...............~~(,_,"> 7.23/27.52 hrs ...............~~(,_,"> 7.27/27.58 hrs ...............~~(,_,"> 7.31/27.60 hrs ...............~~(,_,"> 7.36/27.68 hrs ...............~~(,_,"> 7.40/27.72 hrs ................~~(,_,"> 7.44/27.77 hrs ................~~(,_,"> 7.49/27.83 hrs ................~~(,_,"> 7.54/27.90 hrs ................~~(,_,"> 7.58/27.96 hrs ................~~(,_,"> 7.62/27.98 hrs ................~~(,_,"> 7.66/28.00 hrs ................~~(,_,"> 7.67/27.96 hrs ................~~(,_,"> 7.69/27.90 hrs ................~~(,_,"> 7.73/27.96 hrs ................~~(,_,"> 7.77/27.98 hrs ................~~(,_,"> 7.81/28.02 hrs ................~~(,_,"> 7.86/28.09 hrs ................~~(,_,"> 7.90/28.11 hrs ................~~(,_,"> 7.94/28.14 hrs ................~~(,_,"> 7.98/28.19 hrs ................~~(,_,"> 8.02/28.23 hrs .................~~(,_,"> 8.06/28.27 hrs .................~~(,_,"> 8.10/28.30 hrs .................~~(,_,"> 8.13/28.29 hrs .................~~(,_,"> 8.17/28.31 hrs .................~~(,_,"> 8.21/28.34 hrs .................~~(,_,"> 8.23/28.31 hrs .................~~(,_,"> 8.25/28.29 hrs .................~~(,_,"> 8.27/28.23 hrs .................~~(,_,"> 8.29/28.20 hrs .................~~(,_,"> 8.31/28.18 hrs .................~~(,_,"> 8.34/28.16 hrs .................~~(,_,"> 8.35/28.12 hrs .................~~(,_,"> 8.37/28.06 hrs .................~~(,_,"> 8.38/27.99 hrs .................~~(,_,"> 8.39/27.94 hrs ..................~~(,_,"> 8.43/27.96 hrs ..................~~(,_,"> 8.47/27.99 hrs ..................~~(,_,"> 8.50/28.01 hrs ..................~~(,_,"> 8.54/28.04 hrs ..................~~(,_,"> 8.58/28.07 hrs ..................~~(,_,"> 8.62/28.10 hrs ..................~~(,_,"> 8.66/28.14 hrs ..................~~(,_,"> 8.70/28.16 hrs ..................~~(,_,"> 8.72/28.14 hrs ..................~~(,_,"> 8.74/28.08 hrs ..................~~(,_,"> 8.75/28.04 hrs ..................~~(,_,"> 8.77/28.00 hrs ..................~~(,_,"> 8.79/27.98 hrs ..................~~(,_,"> 8.82/27.96 hrs ..................~~(,_,"> 8.84/27.93 hrs ..................~~(,_,"> 8.85/27.88 hrs ...................~~(,_,"> 8.87/27.85 hrs ...................~~(,_,"> 8.89/27.82 hrs ...................~~(,_,"> 8.90/27.76 hrs ...................~~(,_,"> 8.92/27.72 hrs ...................~~(,_,"> 8.93/27.66 hrs ...................~~(,_,"> 8.95/27.63 hrs ...................~~(,_,"> 8.96/27.56 hrs ...................~~(,_,"> 8.99/27.55 hrs ...................~~(,_,"> 9.00/27.51 hrs ...................~~(,_,"> 9.02/27.48 hrs ...................~~(,_,"> 9.04/27.44 hrs ...................~~(,_,"> 9.05/27.39 hrs ...................~~(,_,"> 9.07/27.35 hrs ...................~~(,_,"> 9.07/27.28 hrs ...................~~(,_,"> 9.09/27.24 hrs ....................~~(,_,"> 9.11/27.20 hrs ....................~~(,_,"> 9.12/27.14 hrs ....................~~(,_,"> 9.14/27.13 hrs ....................~~(,_,"> 9.15/27.07 hrs ....................~~(,_,"> 9.17/27.03 hrs ....................~~(,_,"> 9.17/26.97 hrs ....................~~(,_,"> 9.18/26.91 hrs ....................~~(,_,"> 9.20/26.86 hrs ....................~~(,_,"> 9.20/26.81 hrs ....................~~(,_,"> 9.22/26.77 hrs ....................~~(,_,"> 9.24/26.74 hrs ....................~~(,_,"> 9.26/26.72 hrs ....................~~(,_,"> 9.28/26.70 hrs ....................~~(,_,"> 9.31/26.69 hrs ....................~~(,_,"> 9.32/26.65 hrs ....................~~(,_,"> 9.34/26.61 hrs .....................~~(,_,"> 9.35/26.57 hrs .....................~~(,_,"> 9.38/26.56 hrs .....................~~(,_,"> 9.40/26.54 hrs .....................~~(,_,"> 9.42/26.51 hrs .....................~~(,_,"> 9.44/26.50 hrs .....................~~(,_,"> 9.46/26.48 hrs .....................~~(,_,"> 9.49/26.47 hrs .....................~~(,_,"> 9.50/26.43 hrs .....................~~(,_,"> 9.51/26.38 hrs .....................~~(,_,"> 9.53/26.36 hrs .....................~~(,_,"> 9.56/26.35 hrs .....................~~(,_,"> 9.59/26.35 hrs .....................~~(,_,"> 9.60/26.31 hrs .....................~~(,_,"> 9.63/26.32 hrs .....................~~(,_,"> 9.67/26.34 hrs ......................~~(,_,"> 9.70/26.34 hrs ......................~~(,_,"> 9.73/26.36 hrs ......................~~(,_,"> 9.77/26.37 hrs ......................~~(,_,"> 9.79/26.36 hrs ......................~~(,_,"> 9.82/26.37 hrs ......................~~(,_,"> 9.86/26.40 hrs ......................~~(,_,"> 9.90/26.43 hrs ......................~~(,_,"> 9.93/26.44 hrs ......................~~(,_,"> 9.95/26.41 hrs ......................~~(,_,"> 9.98/26.40 hrs ......................~~(,_,"> 10.00/26.38 hrs ......................~~(,_,"> 10.03/26.41 hrs ......................~~(,_,"> 10.07/26.42 hrs ......................~~(,_,"> 10.11/26.46 hrs ......................~~(,_,"> 10.15/26.48 hrs ......................~~(,_,"> 10.19/26.51 hrs .......................~~(,_,"> 10.22/26.52 hrs .......................~~(,_,"> 10.24/26.51 hrs .......................~~(,_,"> 10.27/26.51 hrs .......................~~(,_,"> 10.30/26.52 hrs .......................~~(,_,"> 10.34/26.52 hrs .......................~~(,_,"> 10.36/26.51 hrs .......................~~(,_,"> 10.38/26.49 hrs .......................~~(,_,"> 10.40/26.47 hrs .......................~~(,_,"> 10.43/26.47 hrs .......................~~(,_,"> 10.46/26.47 hrs .......................~~(,_,"> 10.49/26.49 hrs .......................~~(,_,"> 10.52/26.50 hrs .......................~~(,_,"> 10.56/26.51 hrs .......................~~(,_,"> 10.60/26.55 hrs .......................~~(,_,"> 10.64/26.58 hrs ........................~~(,_,"> 10.69/26.63 hrs ........................~~(,_,"> 10.72/26.62 hrs ........................~~(,_,"> 10.76/26.65 hrs ........................~~(,_,"> 10.78/26.64 hrs ........................~~(,_,"> 10.82/26.66 hrs ........................~~(,_,"> 10.86/26.69 hrs ........................~~(,_,"> 10.90/26.71 hrs ........................~~(,_,"> 10.94/26.75 hrs ........................~~(,_,"> 10.99/26.80 hrs ........................~~(,_,"> 11.02/26.80 hrs ........................~~(,_,"> 11.05/26.81 hrs ........................~~(,_,"> 11.09/26.83 hrs ........................~~(,_,"> 11.14/26.87 hrs ........................~~(,_,"> 11.18/26.92 hrs ........................~~(,_,"> 11.22/26.94 hrs ........................~~(,_,"> 11.27/26.97 hrs .........................~~(,_,"> 11.30/26.99 hrs .........................~~(,_,"> 11.35/27.03 hrs .........................~~(,_,"> 11.38/27.05 hrs .........................~~(,_,"> 11.43/27.08 hrs .........................~~(,_,"> 11.47/27.11 hrs .........................~~(,_,"> 11.52/27.15 hrs .........................~~(,_,"> 11.54/27.15 hrs .........................~~(,_,"> 11.58/27.17 hrs .........................~~(,_,"> 11.62/27.18 hrs .........................~~(,_,"> 11.66/27.22 hrs .........................~~(,_,"> 11.71/27.25 hrs .........................~~(,_,"> 11.73/27.24 hrs .........................~~(,_,"> 11.75/27.22 hrs .........................~~(,_,"> 11.77/27.21 hrs .........................~~(,_,"> 11.80/27.19 hrs ..........................~~(,_,"> 11.81/27.16 hrs ..........................~~(,_,"> 11.83/27.15 hrs ..........................~~(,_,"> 11.85/27.12 hrs ..........................~~(,_,"> 11.88/27.11 hrs ..........................~~(,_,"> 11.89/27.08 hrs ..........................~~(,_,"> 11.92/27.07 hrs ..........................~~(,_,"> 11.94/27.05 hrs ..........................~~(,_,"> 11.97/27.05 hrs ..........................~~(,_,"> 11.98/27.02 hrs ..........................~~(,_,"> 12.01/27.01 hrs ..........................~~(,_,"> 12.03/27.00 hrs ..........................~~(,_,"> 12.05/26.98 hrs ..........................~~(,_,"> 12.08/26.97 hrs ..........................~~(,_,"> 12.11/26.97 hrs ..........................~~(,_,"> 12.13/26.96 hrs ..........................~~(,_,"> 12.17/26.98 hrs ...........................~~(,_,"> 12.20/26.99 hrs ...........................~~(,_,"> 12.24/27.00 hrs ...........................~~(,_,"> 12.25/26.97 hrs ...........................~~(,_,"> 12.29/26.98 hrs ...........................~~(,_,"> 12.32/26.99 hrs ...........................~~(,_,"> 12.33/26.95 hrs ...........................~~(,_,"> 12.36/26.94 hrs ...........................~~(,_,"> 12.37/26.92 hrs ...........................~~(,_,"> 12.40/26.92 hrs ...........................~~(,_,"> 12.44/26.94 hrs ...........................~~(,_,"> 12.47/26.94 hrs ...........................~~(,_,"> 12.50/26.95 hrs ...........................~~(,_,"> 12.53/26.95 hrs ...........................~~(,_,"> 12.57/26.97 hrs ...........................~~(,_,"> 12.61/26.98 hrs ............................~~(,_,"> 12.65/27.01 hrs ............................~~(,_,"> 12.68/27.01 hrs ............................~~(,_,"> 12.71/27.01 hrs ............................~~(,_,"> 12.74/27.01 hrs ............................~~(,_,"> 12.76/27.01 hrs ............................~~(,_,"> 12.79/27.01 hrs ............................~~(,_,"> 12.83/27.02 hrs ............................~~(,_,"> 12.86/27.03 hrs ............................~~(,_,"> 12.90/27.06 hrs ............................~~(,_,"> 12.94/27.08 hrs ............................~~(,_,"> 12.97/27.07 hrs ............................~~(,_,"> 12.99/27.07 hrs ............................~~(,_,"> 13.03/27.09 hrs ............................~~(,_,"> 13.07/27.11 hrs ............................~~(,_,"> 13.12/27.14 hrs ............................~~(,_,"> 13.15/27.15 hrs .............................~~(,_,"> 13.19/27.16 hrs .............................~~(,_,"> 13.22/27.17 hrs .............................~~(,_,"> 13.25/27.18 hrs .............................~~(,_,"> 13.28/27.18 hrs .............................~~(,_,"> 13.32/27.19 hrs .............................~~(,_,"> 13.36/27.21 hrs .............................~~(,_,"> 13.39/27.22 hrs .............................~~(,_,"> 13.42/27.22 hrs .............................~~(,_,"> 13.46/27.24 hrs .............................~~(,_,"> 13.50/27.26 hrs .............................~~(,_,"> 13.53/27.27 hrs .............................~~(,_,"> 13.57/27.29 hrs .............................~~(,_,"> 13.61/27.31 hrs .............................~~(,_,"> 13.65/27.33 hrs .............................~~(,_,"> 13.68/27.33 hrs ..............................~~(,_,"> 13.71/27.34 hrs ..............................~~(,_,"> 13.76/27.37 hrs ..............................~~(,_,"> 13.80/27.39 hrs ..............................~~(,_,"> 13.83/27.40 hrs ..............................~~(,_,"> 13.87/27.41 hrs ..............................~~(,_,"> 13.90/27.42 hrs ..............................~~(,_,"> 13.94/27.44 hrs ..............................~~(,_,"> 13.98/27.47 hrs ..............................~~(,_,"> 14.03/27.49 hrs ..............................~~(,_,"> 14.06/27.50 hrs ..............................~~(,_,"> 14.10/27.53 hrs ..............................~~(,_,"> 14.15/27.55 hrs ..............................~~(,_,"> 14.19/27.58 hrs ..............................~~(,_,"> 14.23/27.61 hrs ..............................~~(,_,"> 14.28/27.65 hrs ...............................~~(,_,"> 14.32/27.66 hrs ...............................~~(,_,"> 14.35/27.67 hrs ...............................~~(,_,"> 14.40/27.69 hrs ...............................~~(,_,"> 14.43/27.70 hrs ...............................~~(,_,"> 14.47/27.71 hrs ...............................~~(,_,"> 14.50/27.73 hrs ...............................~~(,_,"> 14.54/27.73 hrs ...............................~~(,_,"> 14.57/27.73 hrs ...............................~~(,_,"> 14.61/27.75 hrs ...............................~~(,_,"> 14.65/27.77 hrs ...............................~~(,_,"> 14.70/27.81 hrs ...............................~~(,_,"> 14.74/27.83 hrs ...............................~~(,_,"> 14.76/27.81 hrs ...............................~~(,_,"> 14.79/27.82 hrs ...............................~~(,_,"> 14.83/27.83 hrs ...............................~~(,_,"> 14.87/27.86 hrs ................................~~(,_,"> 14.91/27.87 hrs ................................~~(,_,"> 14.95/27.89 hrs ................................~~(,_,"> 14.99/27.90 hrs ................................~~(,_,"> 15.03/27.93 hrs ................................~~(,_,"> 15.07/27.94 hrs ................................~~(,_,"> 15.11/27.96 hrs ................................~~(,_,"> 15.16/27.99 hrs ................................~~(,_,"> 15.20/28.02 hrs ................................~~(,_,"> 15.26/28.08 hrs ................................~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 8923 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 3 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... === RELION MPI setup === + Number of MPI processes = 3 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1356 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo]-------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 13444 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 3 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1356 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo]-------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 54193 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 2 + Master (0) runs on host = giannis.dyn.berkeley.edu ================= + Slave 1 runs on host = giannis.dyn.berkeley.edu + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1356 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.09/62.90 hrs ~~(,_,"> 0.15/49.34 hrs ~~(,_,"> 0.19/43.88 hrs ~~(,_,"> 0.26/44.40 hrs ~~(,_,"> 0.35/47.35 hrs ~~(,_,"> === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu ================= + Slave 3 runs on host = giannis.dyn.berkeley.edu + Reading Refine3D/job190/run_ct8_data.star... 0.44/49.81 hrs ~~(,_,">-------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 82520 on node giannis exited on signal 15 (Terminated). -------------------------------------------------------------------------- + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A -------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 37189 on node giannis exited on signal 15 (Terminated). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu + Slave 3 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1345 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo]-------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 38984 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu + Slave 3 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1343 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo]-------------------------------------------------------------------------- mpirun noticed that process rank 2 with PID 12421 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu + Slave 3 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1343 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo]-------------------------------------------------------------------------- mpirun noticed that process rank 2 with PID 69778 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu + Slave 3 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1343 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... === RELION MPI setup === + Number of MPI processes = 4 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu + Slave 3 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1343 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo]-------------------------------------------------------------------------- mpirun noticed that process rank 2 with PID 116347 on node giannis exited on signal 9 (Killed). -------------------------------------------------------------------------- === RELION MPI setup === + Number of MPI processes = 3 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1343 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 1343 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.02/31.71 hrs ~~(,_,"> 0.05/33.20 hrs ~~(,_,"> 0.07/32.70 hrs ~~(,_,"> 0.10/32.64 hrs ~~(,_,"> 0.12/32.38 hrs ~~(,_,"> 0.14/32.27 hrs ~~(,_,"> 0.17/32.72 hrs ~~(,_,"> 0.19/31.48 hrs ~~(,_,"> 0.20/29.51 hrs ~~(,_,"> 0.22/28.91 hrs ~~(,_,"> 0.23/28.69 hrs ~~(,_,"> 0.25/28.38 hrs ~~(,_,"> 0.27/28.01 hrs ~~(,_,"> 0.29/27.58 hrs ~~(,_,"> 0.30/26.71 hrs ~~(,_,"> 0.31/26.28 hrs ~~(,_,"> 0.33/26.16 hrs ~~(,_,"> 0.35/26.05 hrs ~~(,_,"> 0.36/25.78 hrs ~~(,_,"> 0.38/25.52 hrs ~~(,_,"> 0.39/24.94 hrs ~~(,_,"> 0.40/24.66 hrs ~~(,_,"> 0.41/24.04 hrs .~~(,_,"> 0.42/23.70 hrs .~~(,_,"> 0.44/23.55 hrs .~~(,_,"> 0.46/23.55 hrs .~~(,_,"> 0.47/23.50 hrs .~~(,_,"> 0.49/23.37 hrs .~~(,_,"> 0.50/23.03 hrs .~~(,_,"> 0.51/23.01 hrs .~~(,_,"> 0.52/22.67 hrs .~~(,_,"> 0.54/22.53 hrs .~~(,_,"> 0.55/22.47 hrs .~~(,_,"> 0.57/22.55 hrs .~~(,_,"> 0.59/22.59 hrs .~~(,_,"> 0.60/22.48 hrs .~~(,_,"> 0.61/22.29 hrs .~~(,_,"> 0.63/22.38 hrs .~~(,_,"> 0.66/22.58 hrs .~~(,_,"> 0.67/22.54 hrs .~~(,_,"> 0.69/22.49 hrs .~~(,_,"> 0.70/22.28 hrs .~~(,_,"> 0.70/21.90 hrs .~~(,_,"> 0.71/21.67 hrs .~~(,_,"> 0.73/21.72 hrs ..~~(,_,"> 0.75/21.75 hrs ..~~(,_,"> 0.76/21.68 hrs ..~~(,_,"> 0.78/21.69 hrs ..~~(,_,"> 0.79/21.63 hrs ..~~(,_,"> 0.80/21.48 hrs ..~~(,_,"> 0.81/21.34 hrs ..~~(,_,"> 0.83/21.36 hrs ..~~(,_,"> 0.85/21.45 hrs ..~~(,_,"> 0.86/21.34 hrs ..~~(,_,"> 0.86/21.05 hrs ..~~(,_,"> 0.88/21.07 hrs ..~~(,_,"> 0.90/21.10 hrs ..~~(,_,"> 0.91/21.08 hrs ..~~(,_,"> 0.93/21.06 hrs ..~~(,_,"> 0.94/20.93 hrs ..~~(,_,"> 0.96/21.07 hrs ..~~(,_,"> 0.98/21.22 hrs ..~~(,_,"> 1.00/21.36 hrs ..~~(,_,"> 1.02/21.47 hrs ..~~(,_,"> 1.04/21.50 hrs ..~~(,_,"> 1.06/21.53 hrs ..~~(,_,"> 1.08/21.61 hrs ..~~(,_,"> 1.10/21.69 hrs ...~~(,_,"> 1.12/21.76 hrs ...~~(,_,"> 1.14/21.84 hrs ...~~(,_,"> 1.16/21.95 hrs ...~~(,_,"> 1.18/22.07 hrs ...~~(,_,"> 1.21/22.19 hrs ...~~(,_,"> 1.21/22.02 hrs ...~~(,_,"> 1.23/22.06 hrs ...~~(,_,"> 1.25/22.05 hrs ...~~(,_,"> 1.27/22.09 hrs ...~~(,_,"> 1.29/22.17 hrs ...~~(,_,"> 1.31/22.23 hrs ...~~(,_,"> 1.33/22.30 hrs ...~~(,_,"> 1.35/22.32 hrs ...~~(,_,"> 1.36/22.35 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........~~(,_,"> 3.03/22.08 hrs ........~~(,_,"> 3.04/22.07 hrs ........~~(,_,"> 3.06/22.07 hrs ........~~(,_,"> 3.07/22.07 hrs ........~~(,_,"> 3.09/22.04 hrs ........~~(,_,"> 3.10/22.04 hrs ........~~(,_,"> 3.12/22.04 hrs ........~~(,_,"> 3.13/22.02 hrs ........~~(,_,"> 3.14/21.98 hrs ........~~(,_,"> 3.15/21.95 hrs ........~~(,_,"> 3.17/21.92 hrs ........~~(,_,"> 3.18/21.92 hrs ........~~(,_,"> 3.20/21.93 hrs ........~~(,_,"> 3.22/21.96 hrs ........~~(,_,"> 3.24/21.96 hrs ........~~(,_,"> 3.26/21.98 hrs ........~~(,_,"> 3.27/21.98 hrs ........~~(,_,"> 3.29/21.97 hrs ........~~(,_,"> 3.30/21.95 hrs .........~~(,_,"> 3.32/21.96 hrs .........~~(,_,"> 3.34/21.97 hrs .........~~(,_,"> 3.36/21.98 hrs .........~~(,_,"> 3.37/21.99 hrs .........~~(,_,"> 3.39/22.00 hrs .........~~(,_,"> 3.41/21.99 hrs .........~~(,_,"> 3.42/21.99 hrs .........~~(,_,"> 3.44/21.99 hrs .........~~(,_,"> 3.46/21.99 hrs .........~~(,_,"> 3.47/21.98 hrs .........~~(,_,"> 3.49/21.99 hrs .........~~(,_,"> 3.50/21.99 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hrs ..................~~(,_,"> 7.25/22.93 hrs ..................~~(,_,"> 7.28/22.95 hrs ...................~~(,_,"> 7.31/22.98 hrs ...................~~(,_,"> 7.33/23.00 hrs ...................~~(,_,"> 7.36/23.02 hrs ...................~~(,_,"> 7.38/23.05 hrs ...................~~(,_,"> 7.40/23.07 hrs ...................~~(,_,"> 7.43/23.09 hrs ...................~~(,_,"> 7.45/23.10 hrs ...................~~(,_,"> 7.47/23.12 hrs ...................~~(,_,"> 7.50/23.15 hrs ...................~~(,_,"> 7.52/23.17 hrs ...................~~(,_,"> 7.55/23.19 hrs ...................~~(,_,"> 7.57/23.21 hrs ...................~~(,_,"> 7.59/23.23 hrs ...................~~(,_,"> 7.61/23.24 hrs ...................~~(,_,"> 7.64/23.26 hrs ...................~~(,_,"> 7.66/23.29 hrs ...................~~(,_,"> 7.69/23.31 hrs ...................~~(,_,"> 7.71/23.33 hrs ...................~~(,_,"> 7.73/23.34 hrs ...................~~(,_,"> 7.75/23.35 hrs ...................~~(,_,"> 7.76/23.33 hrs 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.......................~~(,_,"> 8.95/22.42 hrs .......................~~(,_,"> 8.97/22.43 hrs .......................~~(,_,"> 8.99/22.44 hrs ........................~~(,_,"> 9.01/22.44 hrs ........................~~(,_,"> 9.02/22.44 hrs ........................~~(,_,"> 9.05/22.46 hrs ........................~~(,_,"> 9.07/22.46 hrs ........................~~(,_,"> 9.09/22.47 hrs ........................~~(,_,"> 9.11/22.48 hrs ........................~~(,_,"> 9.13/22.49 hrs ........................~~(,_,"> 9.15/22.50 hrs ........................~~(,_,"> 9.17/22.51 hrs ........................~~(,_,"> 9.19/22.52 hrs ........................~~(,_,"> 9.21/22.53 hrs ........................~~(,_,"> 9.23/22.53 hrs ........................~~(,_,"> 9.25/22.54 hrs ........................~~(,_,"> 9.27/22.55 hrs ........................~~(,_,"> 9.29/22.55 hrs ........................~~(,_,"> 9.30/22.55 hrs ........................~~(,_,"> 9.32/22.56 hrs ........................~~(,_,"> 9.34/22.56 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.........................~~(,_,"> 9.69/22.56 hrs .........................~~(,_,"> 9.71/22.56 hrs .........................~~(,_,"> 9.73/22.57 hrs .........................~~(,_,"> 9.75/22.57 hrs .........................~~(,_,"> 9.77/22.57 hrs .........................~~(,_,"> 9.79/22.58 hrs ..........................~~(,_,"> 9.80/22.57 hrs ..........................~~(,_,"> 9.81/22.56 hrs ..........................~~(,_,"> 9.83/22.56 hrs ..........................~~(,_,"> 9.84/22.55 hrs ..........................~~(,_,"> 9.85/22.54 hrs ..........................~~(,_,"> 9.86/22.52 hrs ..........................~~(,_,"> 9.87/22.51 hrs ..........................~~(,_,"> 9.88/22.50 hrs ..........................~~(,_,"> 9.90/22.49 hrs ..........................~~(,_,"> 9.91/22.48 hrs ..........................~~(,_,"> 9.92/22.47 hrs ..........................~~(,_,"> 9.94/22.46 hrs ..........................~~(,_,"> 9.95/22.45 hrs ..........................~~(,_,"> 9.96/22.45 hrs 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.............................~~(,_,"> 11.40/22.79 hrs ..............................~~(,_,"> 11.42/22.80 hrs ..............................~~(,_,"> 11.44/22.80 hrs ..............................~~(,_,"> 11.47/22.81 hrs ..............................~~(,_,"> 11.49/22.82 hrs ..............................~~(,_,"> 11.51/22.84 hrs ..............................~~(,_,"> 11.54/22.85 hrs ..............................~~(,_,"> 11.56/22.86 hrs ..............................~~(,_,"> 11.58/22.86 hrs ..............................~~(,_,"> 11.60/22.87 hrs ..............................~~(,_,"> 11.62/22.88 hrs ..............................~~(,_,"> 11.63/22.88 hrs ..............................~~(,_,"> 11.65/22.88 hrs ..............................~~(,_,"> 11.67/22.88 hrs ..............................~~(,_,"> 11.69/22.89 hrs ..............................~~(,_,"> 11.71/22.90 hrs ..............................~~(,_,"> 11.73/22.90 hrs ..............................~~(,_,"> 11.74/22.89 hrs 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hrs ..........................................~~(,_,"> 15.94/22.22 hrs ...........................................~~(,_,"> 15.95/22.22 hrs ...........................................~~(,_,"> 15.97/22.22 hrs ...........................................~~(,_,"> 15.98/22.22 hrs ...........................................~~(,_,"> 15.99/22.21 hrs ...........................................~~(,_,"> 16.01/22.21 hrs ...........................................~~(,_,"> 16.02/22.20 hrs ...........................................~~(,_,"> 16.03/22.20 hrs ...........................................~~(,_,"> 16.05/22.19 hrs ...........................................~~(,_,"> 16.06/22.19 hrs ...........................................~~(,_,"> 16.07/22.18 hrs ...........................................~~(,_,"> 16.08/22.17 hrs ...........................................~~(,_,"> 16.09/22.17 hrs ...........................................~~(,_,"> 16.10/22.16 hrs 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17.12/21.40 hrs ...............................................~~(,_,"> 17.12/21.39 hrs ................................................~~(,_,"> 17.13/21.38 hrs ................................................~~(,_,"> 17.14/21.37 hrs ................................................~~(,_,"> 17.14/21.36 hrs ................................................~~(,_,"> 17.15/21.34 hrs ................................................~~(,_,"> 17.16/21.33 hrs ................................................~~(,_,"> 17.16/21.32 hrs ................................................~~(,_,"> 17.17/21.31 hrs ................................................~~(,_,"> 17.17/21.30 hrs ................................................~~(,_,"> 17.18/21.28 hrs ................................................~~(,_,"> 17.18/21.26 hrs ................................................~~(,_,"> 17.18/21.25 hrs ................................................~~(,_,"> 17.19/21.23 hrs ................................................~~(,_,"> 17.19/21.22 hrs ................................................~~(,_,"> 17.20/21.21 hrs ................................................~~(,_,"> 17.20/21.19 hrs ................................................~~(,_,"> 17.20/21.18 hrs ................................................~~(,_,"> 17.21/21.16 hrs ................................................~~(,_,"> 17.21/21.15 hrs ................................................~~(,_,"> 17.22/21.14 hrs ................................................~~(,_,"> 17.23/21.13 hrs ................................................~~(,_,"> 17.24/21.12 hrs ................................................~~(,_,"> 17.25/21.11 hrs .................................................~~(,_,"> 17.25/21.10 hrs .................................................~~(,_,"> 17.26/21.09 hrs .................................................~~(,_,"> 17.27/21.08 hrs .................................................~~(,_,"> 17.27/21.07 hrs .................................................~~(,_,"> 17.28/21.06 hrs .................................................~~(,_,"> 17.29/21.05 hrs .................................................~~(,_,"> 17.30/21.04 hrs .................................................~~(,_,"> 17.30/21.03 hrs .................................................~~(,_,"> 17.31/21.02 hrs .................................................~~(,_,"> 17.32/21.02 hrs .................................................~~(,_,"> 17.34/21.01 hrs .................................................~~(,_,"> 17.35/21.01 hrs .................................................~~(,_,"> 17.36/21.00 hrs .................................................~~(,_,"> 17.37/20.99 hrs .................................................~~(,_,"> 17.38/20.99 hrs .................................................~~(,_,"> 17.39/20.99 hrs .................................................~~(,_,"> 17.40/20.98 hrs .................................................~~(,_,"> 17.42/20.98 hrs .................................................~~(,_,"> 17.43/20.98 hrs .................................................~~(,_,"> 17.45/20.98 hrs .................................................~~(,_,"> 17.46/20.98 hrs .................................................~~(,_,"> 17.47/20.97 hrs .................................................~~(,_,"> 17.48/20.97 hrs ..................................................~~(,_,"> 17.50/20.96 hrs ..................................................~~(,_,"> 17.51/20.95 hrs ..................................................~~(,_,"> 17.52/20.95 hrs ..................................................~~(,_,"> 17.53/20.94 hrs ..................................................~~(,_,"> 17.54/20.94 hrs ..................................................~~(,_,"> 17.56/20.94 hrs ..................................................~~(,_,"> 17.57/20.94 hrs ..................................................~~(,_,"> 17.58/20.93 hrs ..................................................~~(,_,"> 17.59/20.92 hrs ..................................................~~(,_,"> 17.61/20.92 hrs ..................................................~~(,_,"> 17.62/20.93 hrs ..................................................~~(,_,"> 17.64/20.93 hrs ..................................................~~(,_,"> 17.65/20.93 hrs ..................................................~~(,_,"> 17.67/20.93 hrs ..................................................~~(,_,"> 17.68/20.93 hrs ..................................................~~(,_,"> 17.70/20.92 hrs ..................................................~~(,_,"> 17.71/20.92 hrs ..................................................~~(,_,"> 17.73/20.92 hrs ..................................................~~(,_,"> 17.75/20.92 hrs ..................................................~~(,_,"> 17.76/20.92 hrs ..................................................~~(,_,"> 17.77/20.92 hrs ..................................................~~(,_,"> 17.79/20.92 hrs ...................................................~~(,_,"> 17.80/20.92 hrs ...................................................~~(,_,"> 17.81/20.91 hrs ...................................................~~(,_,"> 17.83/20.91 hrs ...................................................~~(,_,"> exiting with an abort ... === RELION MPI setup === + Number of MPI processes = 3 + Master (0) runs on host = giannis.dyn.berkeley.edu + Slave 1 runs on host = giannis.dyn.berkeley.edu + Slave 2 runs on host = giannis.dyn.berkeley.edu ================= + Reading Refine3D/job190/run_ct8_data.star... + Using movie pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 0.5685 A + Using coord. pixel size from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.137 A + Using dose per frame from MotionCorr/job008/Frames/DK7nd_smod7_2_105-10_0005.star: 1.0318 e/A^2 - Will only estimate motion for 198 unfinished micrographs - Will recombine frames for all 2964 micrographs - none are finished + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job190/run_ct8_half1_class001_unfil.mrc - Half map 2: Refine3D/job190/run_ct8_half2_class001_unfil.mrc - Mask: MaskCreate/job193/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + using parameters from: Polish/job195/opt_params_all_groups.txt s_vel: 0.9, s_div: 4215, s_acc: 3.93 + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.03/2.00 hrs ~~(,_,"> 0.06/1.84 hrs .~~(,_,"> 0.08/1.82 hrs ..~~(,_,"> 0.12/1.90 hrs ...~~(,_,"> 0.13/1.73 hrs ....~~(,_,"> 0.15/1.63 hrs .....~~(,_,"> 0.17/1.59 hrs ......~~(,_,"> 0.19/1.59 hrs .......~~(,_,"> 0.21/1.54 hrs ........~~(,_,"> 0.24/1.58 hrs .........~~(,_,"> 0.26/1.58 hrs ..........~~(,_,"> 0.28/1.56 hrs ..........~~(,_,"> 0.30/1.55 hrs ...........~~(,_,"> 0.33/1.57 hrs ............~~(,_,"> 0.36/1.60 hrs .............~~(,_,"> 0.39/1.62 hrs ..............~~(,_,"> 0.42/1.62 hrs ...............~~(,_,"> 0.45/1.66 hrs ................~~(,_,"> 0.48/1.67 hrs .................~~(,_,"> 0.52/1.70 hrs ..................~~(,_,"> 0.55/1.71 hrs ...................~~(,_,"> 0.58/1.74 hrs ...................~~(,_,"> 0.61/1.76 hrs ....................~~(,_,"> 0.64/1.76 hrs .....................~~(,_,"> 0.67/1.77 hrs ......................~~(,_,"> 0.70/1.78 hrs .......................~~(,_,"> 0.73/1.78 hrs ........................~~(,_,"> 0.75/1.78 hrs .........................~~(,_,"> 0.78/1.77 hrs ..........................~~(,_,"> 0.80/1.77 hrs ...........................~~(,_,"> 0.83/1.77 hrs ............................~~(,_,"> 0.86/1.78 hrs .............................~~(,_,"> 0.88/1.76 hrs ..............................~~(,_,"> 0.89/1.73 hrs ..............................~~(,_,"> 0.90/1.71 hrs ...............................~~(,_,"> 0.91/1.68 hrs ................................~~(,_,"> 0.92/1.65 hrs .................................~~(,_,"> 0.93/1.62 hrs ..................................~~(,_,"> 0.94/1.59 hrs ...................................~~(,_,"> 0.95/1.56 hrs ....................................~~(,_,"> 0.95/1.54 hrs .....................................~~(,_,"> 0.96/1.51 hrs ......................................~~(,_,"> 0.97/1.49 hrs .......................................~~(,_,"> 0.98/1.48 hrs .......................................~~(,_,"> 0.99/1.45 hrs ........................................~~(,_,"> 1.00/1.43 hrs .........................................~~(,_,"> 1.01/1.42 hrs ..........................................~~(,_,"> 1.02/1.40 hrs ...........................................~~(,_,"> 1.03/1.39 hrs ............................................~~(,_,"> 1.04/1.38 hrs .............................................~~(,_,"> 1.06/1.37 hrs ..............................................~~(,_,"> 1.08/1.37 hrs ...............................................~~(,_,"> 1.09/1.36 hrs ................................................~~(,_,"> 1.11/1.35 hrs .................................................~~(,_,"> 1.12/1.35 hrs ..................................................~~(,_,"> 1.14/1.34 hrs ..................................................~~(,_,"> 1.15/1.33 hrs ...................................................~~(,_,"> 1.16/1.32 hrs ....................................................~~(,_,"> 1.18/1.32 hrs .....................................................~~(,_,"> 1.19/1.31 hrs ......................................................~~(,_,"> 1.21/1.30 hrs .......................................................~~(,_,"> 1.22/1.30 hrs ........................................................~~(,_,"> 1.24/1.29 hrs .........................................................~~(,_,"> 1.25/1.28 hrs ..........................................................~~(,_,"> 1.25/1.27 hrs ...........................................................~~(,_,"> 1.27/1.27 hrs ............................................................~~(,_,"> + Fitting B/k-factors for optics-group-1 using FCCs from all particles between 20 and 125 pixels, or 20 and 3.27456 Angstrom ... + Combining frames for all micrographs ... 000/??? sec ~~(,_,"> [oo] 0.18/11.32 hrs ~~(,_,"> 0.39/12.04 hrs .~~(,_,"> 0.63/12.97 hrs ..~~(,_,"> 0.94/14.47 hrs ...~~(,_,"> 1.25/15.42 hrs ....~~(,_,"> 1.52/15.67 hrs .....~~(,_,"> 1.83/16.12 hrs ......~~(,_,"> 2.21/17.03 hrs .......~~(,_,"> 2.58/17.68 hrs ........~~(,_,"> 3.05/18.84 hrs .........~~(,_,"> 3.46/19.42 hrs ..........~~(,_,"> 3.81/19.60 hrs ...........~~(,_,"> 4.23/20.11 hrs ............~~(,_,"> 4.64/20.45 hrs .............~~(,_,"> 5.08/20.90 hrs ..............~~(,_,"> 5.49/21.20 hrs ...............~~(,_,"> 6.00/21.78 hrs ................~~(,_,"> 6.42/22.01 hrs .................~~(,_,"> 6.74/21.90 hrs ..................~~(,_,"> 7.24/22.35 hrs ...................~~(,_,"> 7.73/22.73 hrs ....................~~(,_,"> 8.06/22.63 hrs .....................~~(,_,"> 8.44/22.67 hrs ......................~~(,_,"> 8.66/22.29 hrs .......................~~(,_,"> 8.88/21.94 hrs ........................~~(,_,"> 9.18/21.81 hrs .........................~~(,_,"> 9.59/21.94 hrs ..........................~~(,_,"> 10.00/22.06 hrs ...........................~~(,_,"> 10.49/22.34 hrs ............................~~(,_,"> 10.91/22.46 hrs .............................~~(,_,"> 11.25/22.42 hrs ..............................~~(,_,"> 11.65/22.49 hrs ...............................~~(,_,"> 12.11/22.65 hrs ................................~~(,_,"> 12.58/22.84 hrs .................................~~(,_,"> 13.09/23.09 hrs ..................................~~(,_,"> 13.59/23.32 hrs ..................................~~(,_,"> 14.20/23.70 hrs ...................................~~(,_,"> 14.62/23.76 hrs ....................................~~(,_,"> 15.05/23.83 hrs .....................................~~(,_,"> 15.41/23.79 hrs ......................................~~(,_,"> 15.90/23.95 hrs .......................................~~(,_,"> 16.38/24.08 hrs ........................................~~(,_,"> 16.84/24.18 hrs .........................................~~(,_,"> 17.29/24.27 hrs ..........................................~~(,_,"> 17.74/24.35 hrs ...........................................~~(,_,"> 18.17/24.39 hrs ............................................~~(,_,"> 18.42/24.20 hrs .............................................~~(,_,"> 18.76/24.13 hrs ..............................................~~(,_,"> 19.18/24.17 hrs ...............................................~~(,_,"> 19.60/24.21 hrs ................................................~~(,_,"> 20.05/24.27 hrs .................................................~~(,_,"> 20.48/24.31 hrs ..................................................~~(,_,"> 20.92/24.38 hrs ...................................................~~(,_,"> 21.34/24.41 hrs ....................................................~~(,_,"> 21.79/24.46 hrs .....................................................~~(,_,"> 22.14/24.41 hrs ......................................................~~(,_,"> 22.46/24.33 hrs .......................................................~~(,_,"> 22.86/24.33 hrs ........................................................~~(,_,"> 23.24/24.32 hrs .........................................................~~(,_,"> 23.64/24.33 hrs ..........................................................~~(,_,"> 23.88/24.17 hrs ...........................................................~~(,_,"> 24.07/24.07 hrs ............................................................~~(,_,"> + Combining all EPS and STAR files ... + Pixel size for optics group 1: 1.137 + Done! + Written logfile in Polish/job196/logfile.pdf + Written new particle STAR file in Polish/job196/shiny.star