++++ Executing new job on Sat Sep 4 10:30:07 2021 ++++ with the following command(s): `which relion_refine_mpi` --o Class2D/job027/run --iter 25 --i Extract/job026/particles.star --dont_combine_weights_via_disc --pool 30 --pad 2 --ctf --ctf_intact_first_peak --tau2_fudge 2 --particle_diameter 340 --K 200 --flatten_solvent --zero_mask --center_classes --oversampling 1 --psi_step 2 --offset_range 5 --offset_step 2 --helical_outer_diameter 200 --bimodal_psi --sigma_psi 2 --helix --helical_rise_initial 4.75 --norm --scale --j 4 --gpu "" --pipeline_control Class2D/job027/ ++++ ++++ Executing new job on Sat Sep 4 10:30:31 2021 ++++ with the following command(s): `which relion_refine_mpi` --o Class2D/job027/run --iter 25 --i Extract/job026/particles.star --dont_combine_weights_via_disc --pool 30 --pad 2 --ctf --ctf_intact_first_peak --tau2_fudge 2 --particle_diameter 340 --K 200 --flatten_solvent --zero_mask --center_classes --oversampling 1 --psi_step 2 --offset_range 5 --offset_step 2 --helical_outer_diameter 200 --bimodal_psi --sigma_psi 2 --helix --helical_rise_initial 4.75 --norm --scale --j 4 --gpu "" --pipeline_control Class2D/job027/ ++++ ++++ Executing new job on Sat Sep 4 10:30:56 2021 ++++ with the following command(s): `which relion_refine_mpi` --o Class2D/job027/run --iter 25 --i Extract/job026/particles.star --dont_combine_weights_via_disc --pool 30 --pad 2 --ctf --ctf_intact_first_peak --tau2_fudge 2 --particle_diameter 340 --K 200 --flatten_solvent --zero_mask --center_classes --oversampling 1 --psi_step 2 --offset_range 5 --offset_step 2 --helical_outer_diameter 200 --bimodal_psi --sigma_psi 2 --helix --helical_rise_initial 4.75 --norm --scale --j 4 --gpu "" --pipeline_control Class2D/job027/ ++++ ++++ Executing new job on Sun Sep 5 22:52:13 2021 ++++ with the following command(s): `which relion_refine_mpi` --continue Class2D/job027/run_it020_optimiser.star --o Class2D/job027/run --iter 25 --dont_combine_weights_via_disc --pool 30 --pad 2 --tau2_fudge 2 --particle_diameter 340 --center_classes --oversampling 1 --psi_step 2 --offset_range 5 --offset_step 2 --helical_outer_diameter 200 --bimodal_psi --sigma_psi 2 --helix --helical_rise_initial 4.75 --j 4 --gpu "" --pipeline_control Class2D/job027/ ++++