++++ Executing new job on Fri Sep 17 11:35:11 2021 ++++ with the following command(s): `which relion_mask_create` --i Refine3D/job097/run_class001.mrc --o MaskCreate/job098/mask.mrc --lowpass 15 --ini_threshold 0.002 --extend_inimask 4 --width_soft_edge 4 --helix --z_percentage 0.3 --j 12 --pipeline_control MaskCreate/job098/ ++++ ++++ Executing new job on Fri Sep 17 11:36:06 2021 ++++ with the following command(s): `which relion_mask_create` --i Refine3D/job097/run_class001.mrc --o MaskCreate/job098/mask.mrc --lowpass 15 --ini_threshold 0.0015 --extend_inimask 4 --width_soft_edge 4 --helix --z_percentage 0.3 --j 12 --pipeline_control MaskCreate/job098/ ++++ ++++ Executing new job on Fri Sep 17 11:36:43 2021 ++++ with the following command(s): `which relion_mask_create` --i Refine3D/job097/run_class001.mrc --o MaskCreate/job098/mask.mrc --lowpass 15 --ini_threshold 0.001 --extend_inimask 4 --width_soft_edge 4 --helix --z_percentage 0.3 --j 12 --pipeline_control MaskCreate/job098/ ++++ ++++ Executing new job on Fri Sep 17 11:38:50 2021 ++++ with the following command(s): `which relion_mask_create` --i Refine3D/job097/run_class001.mrc --o MaskCreate/job098/mask.mrc --lowpass 15 --ini_threshold 0.001 --extend_inimask 5 --width_soft_edge 7 --helix --z_percentage 0.3 --j 12 --pipeline_control MaskCreate/job098/ ++++ ++++ Executing new job on Sun Sep 19 14:32:20 2021 ++++ with the following command(s): `which relion_mask_create` --i Refine3D/job097/run_class001.mrc --o MaskCreate/job098/mask.mrc --lowpass 15 --ini_threshold 0.001 --extend_inimask 4 --width_soft_edge 4 --helix --z_percentage 0.3 --j 12 --pipeline_control MaskCreate/job098/ ++++