=== RELION MPI setup === + Number of MPI processes = 5 + Leader (0) runs on host = hex.lmb.internal + Follower 1 runs on host = hex.lmb.internal + Follower 2 runs on host = hex.lmb.internal + Follower 3 runs on host = hex.lmb.internal + Follower 4 runs on host = hex.lmb.internal ================= + Reading Refine3D/job071/run_data.star... + Using movie pixel size from MotionCorr/job052/Micrographs_826/FoilHole_26569048_Data_26575225_26575227_20210826_215158_fractions.star: 0.73 A + Using coord. pixel size from MotionCorr/job052/Micrographs_826/FoilHole_26569048_Data_26575225_26575227_20210826_215158_fractions.star: 0.73 A + Using dose per frame from MotionCorr/job052/Micrographs_826/FoilHole_26569048_Data_26575225_26575227_20210826_215158_fractions.star: 0.98 e/A^2 + Reading references ... + The names of the reference half maps and the mask were taken from the PostProcess STAR file. - Half map 1: Refine3D/job071/run_half1_class001_unfil.mrc - Half map 2: Refine3D/job071/run_half2_class001_unfil.mrc - Mask: MaskCreate/job065/mask.mrc + Masking references ... + Transforming references ... + Initializing motion estimator ... + Performing loop over micrographs ... 000/??? sec ~~(,_,"> [oo] 0.01/1.06 hrs ~~(,_,"> 0.62/55.80 min ~~(,_,"> 0.04/2.28 hrs ~~(,_,"> 0.04/2.02 hrs .~~(,_,"> 0.05/1.77 hrs .~~(,_,"> 0.05/1.60 hrs .~~(,_,"> 0.06/1.48 hrs ..~~(,_,"> 0.07/1.62 hrs ..~~(,_,"> 0.08/1.52 hrs ..~~(,_,"> 0.08/1.47 hrs ...~~(,_,"> 0.09/1.41 hrs ...~~(,_,"> 0.11/1.62 hrs ...~~(,_,"> 0.11/1.55 hrs ....~~(,_,"> 0.12/1.50 hrs ....~~(,_,"> 0.12/1.45 hrs ....~~(,_,"> 0.12/1.41 hrs .....~~(,_,"> 0.13/1.38 hrs .....~~(,_,"> 0.14/1.36 hrs .....~~(,_,"> 0.14/1.34 hrs ......~~(,_,"> 0.15/1.31 hrs ......~~(,_,"> 0.15/1.30 hrs ......~~(,_,"> 0.16/1.28 hrs .......~~(,_,"> 0.17/1.31 hrs .......~~(,_,"> 0.17/1.29 hrs .......~~(,_,"> 0.18/1.27 hrs ........~~(,_,"> 0.18/1.26 hrs ........~~(,_,"> 0.19/1.26 hrs ........~~(,_,"> 0.19/1.24 hrs .........~~(,_,"> 0.20/1.23 hrs .........~~(,_,"> 0.20/1.21 hrs .........~~(,_,"> 0.22/1.27 hrs ..........~~(,_,"> 0.23/1.31 hrs ..........~~(,_,"> 0.24/1.32 hrs ..........~~(,_,"> 0.25/1.33 hrs ...........~~(,_,"> 0.25/1.31 hrs ...........~~(,_,"> 0.26/1.30 hrs ...........~~(,_,"> 0.26/1.29 hrs ............~~(,_,"> 0.27/1.29 hrs ............~~(,_,"> 0.28/1.28 hrs ............~~(,_,"> 0.28/1.27 hrs .............~~(,_,"> 0.29/1.28 hrs .............~~(,_,"> 0.29/1.26 hrs .............~~(,_,"> 0.30/1.25 hrs ..............~~(,_,"> 0.30/1.24 hrs ..............~~(,_,"> 0.31/1.25 hrs ..............~~(,_,"> 0.32/1.25 hrs ...............~~(,_,"> 0.32/1.25 hrs ...............~~(,_,"> 0.33/1.25 hrs ...............~~(,_,"> 0.34/1.24 hrs ................~~(,_,"> 0.34/1.25 hrs ................~~(,_,"> 0.35/1.24 hrs ................~~(,_,"> 0.36/1.24 hrs .................~~(,_,"> 0.36/1.24 hrs .................~~(,_,"> 0.37/1.23 hrs .................~~(,_,"> 0.38/1.24 hrs ..................~~(,_,"> 0.38/1.23 hrs ..................~~(,_,"> 0.39/1.23 hrs ..................~~(,_,"> 0.39/1.22 hrs ...................~~(,_,"> 0.40/1.21 hrs ...................~~(,_,"> 0.40/1.21 hrs ...................~~(,_,"> 0.41/1.21 hrs ....................~~(,_,"> 0.41/1.21 hrs ....................~~(,_,"> 0.42/1.20 hrs ....................~~(,_,"> 0.42/1.19 hrs .....................~~(,_,"> 0.43/1.19 hrs .....................~~(,_,"> 0.43/1.19 hrs .....................~~(,_,"> 0.44/1.18 hrs ......................~~(,_,"> 0.44/1.17 hrs ......................~~(,_,"> 0.45/1.17 hrs ......................~~(,_,"> 0.45/1.17 hrs .......................~~(,_,"> 0.45/1.16 hrs .......................~~(,_,"> 0.46/1.17 hrs .......................~~(,_,"> 0.47/1.16 hrs ........................~~(,_,"> 0.48/1.18 hrs ........................~~(,_,"> 0.49/1.17 hrs ........................~~(,_,"> 0.49/1.17 hrs .........................~~(,_,"> 0.50/1.18 hrs .........................~~(,_,"> 0.51/1.18 hrs .........................~~(,_,"> 0.51/1.18 hrs ..........................~~(,_,"> 0.52/1.17 hrs ..........................~~(,_,"> 0.52/1.17 hrs ..........................~~(,_,"> 0.53/1.17 hrs ...........................~~(,_,"> 0.53/1.16 hrs ...........................~~(,_,"> 0.54/1.16 hrs ...........................~~(,_,"> 0.54/1.16 hrs ............................~~(,_,"> 0.55/1.15 hrs ............................~~(,_,"> 0.55/1.15 hrs ............................~~(,_,"> 0.56/1.14 hrs .............................~~(,_,"> 0.56/1.14 hrs .............................~~(,_,"> 0.58/1.17 hrs .............................~~(,_,"> 0.58/1.16 hrs ..............................~~(,_,"> 0.59/1.16 hrs ..............................~~(,_,"> 0.60/1.17 hrs ..............................~~(,_,"> 0.61/1.17 hrs ...............................~~(,_,"> 0.62/1.18 hrs ...............................~~(,_,"> 0.63/1.18 hrs ...............................~~(,_,"> 0.63/1.18 hrs ................................~~(,_,"> 0.64/1.18 hrs ................................~~(,_,"> 0.64/1.17 hrs ................................~~(,_,"> 0.65/1.18 hrs .................................~~(,_,"> 0.67/1.19 hrs .................................~~(,_,"> 0.67/1.19 hrs .................................~~(,_,"> 0.69/1.20 hrs ..................................~~(,_,"> 0.71/1.23 hrs ..................................~~(,_,"> 0.71/1.23 hrs ..................................~~(,_,"> 0.72/1.22 hrs ...................................~~(,_,"> 0.72/1.22 hrs ...................................~~(,_,"> 0.73/1.22 hrs ...................................~~(,_,"> 0.74/1.22 hrs ....................................~~(,_,"> 0.75/1.24 hrs ....................................~~(,_,"> 0.76/1.24 hrs ....................................~~(,_,"> 0.76/1.23 hrs .....................................~~(,_,"> 0.81/1.29 hrs .....................................~~(,_,"> 0.81/1.29 hrs .....................................~~(,_,"> 0.82/1.29 hrs ......................................~~(,_,"> 0.82/1.28 hrs ......................................~~(,_,"> 0.83/1.28 hrs ......................................~~(,_,"> 0.83/1.28 hrs .......................................~~(,_,"> 0.84/1.27 hrs .......................................~~(,_,"> 0.84/1.27 hrs .......................................~~(,_,"> 0.85/1.27 hrs ........................................~~(,_,"> 0.85/1.26 hrs ........................................~~(,_,"> 0.86/1.26 hrs ........................................~~(,_,"> 0.86/1.26 hrs .........................................~~(,_,"> 0.87/1.25 hrs .........................................~~(,_,"> 0.87/1.25 hrs .........................................~~(,_,"> 0.88/1.25 hrs ..........................................~~(,_,"> 0.88/1.25 hrs ..........................................~~(,_,"> 0.88/1.24 hrs ..........................................~~(,_,"> 0.89/1.24 hrs ...........................................~~(,_,"> 0.89/1.24 hrs ...........................................~~(,_,"> 0.90/1.23 hrs ...........................................~~(,_,"> 0.90/1.23 hrs ............................................~~(,_,"> 0.91/1.23 hrs ............................................~~(,_,"> 0.92/1.23 hrs ............................................~~(,_,"> 0.93/1.23 hrs .............................................~~(,_,"> 0.97/1.28 hrs .............................................~~(,_,"> 0.97/1.28 hrs .............................................~~(,_,"> 0.98/1.27 hrs ..............................................~~(,_,"> 1.02/1.32 hrs ..............................................~~(,_,"> 1.03/1.32 hrs ..............................................~~(,_,"> 1.05/1.33 hrs ...............................................~~(,_,"> 1.05/1.33 hrs ...............................................~~(,_,"> 1.06/1.33 hrs ...............................................~~(,_,"> 1.06/1.33 hrs ................................................~~(,_,"> 1.07/1.32 hrs ................................................~~(,_,"> 1.08/1.32 hrs ................................................~~(,_,"> 1.08/1.32 hrs .................................................~~(,_,"> 1.08/1.32 hrs .................................................~~(,_,"> 1.09/1.32 hrs .................................................~~(,_,"> 1.09/1.31 hrs ..................................................~~(,_,"> 1.10/1.31 hrs ..................................................~~(,_,"> 1.10/1.31 hrs ..................................................~~(,_,"> 1.11/1.30 hrs ...................................................~~(,_,"> 1.11/1.30 hrs ...................................................~~(,_,"> 1.12/1.30 hrs ...................................................~~(,_,"> 1.12/1.29 hrs ....................................................~~(,_,"> 1.13/1.30 hrs ....................................................~~(,_,"> 1.14/1.30 hrs ....................................................~~(,_,"> 1.14/1.29 hrs .....................................................~~(,_,"> 1.15/1.30 hrs .....................................................~~(,_,"> 1.16/1.30 hrs .....................................................~~(,_,"> 1.16/1.29 hrs ......................................................~~(,_,"> 1.17/1.29 hrs ......................................................~~(,_,"> 1.18/1.29 hrs ......................................................~~(,_,"> 1.18/1.29 hrs .......................................................~~(,_,"> 1.19/1.29 hrs .......................................................~~(,_,"> 1.19/1.29 hrs .......................................................~~(,_,"> 1.20/1.28 hrs ........................................................~~(,_,"> 1.20/1.28 hrs ........................................................~~(,_,"> 1.21/1.28 hrs ........................................................~~(,_,"> 1.21/1.27 hrs .........................................................~~(,_,"> 1.22/1.27 hrs .........................................................~~(,_,"> 1.22/1.27 hrs .........................................................~~(,_,"> 1.22/1.27 hrs ..........................................................~~(,_,"> 1.23/1.27 hrs ..........................................................~~(,_,"> 1.25/1.28 hrs ..........................................................~~(,_,"> 1.25/1.27 hrs ...........................................................~~(,_,"> 1.26/1.27 hrs ...........................................................~~(,_,"> 1.26/1.27 hrs ...........................................................~~(,_,"> 1.27/1.27 hrs ............................................................~~(,_,"> + Fitting B/k-factors for optics-group-1 using FCCs from all particles between 9 and 56 pixels, or 20 and 3.33714 Angstrom ... + Combining frames for micrographs ... 000/??? sec ~~(,_,"> [oo] 0.03/1.68 hrs ~~(,_,"> 0.04/1.28 hrs .~~(,_,"> 0.06/1.25 hrs ..~~(,_,"> 0.09/1.30 hrs ...~~(,_,"> 0.10/1.19 hrs ....~~(,_,"> 0.11/1.13 hrs .....~~(,_,"> 0.13/1.10 hrs ......~~(,_,"> 0.15/1.10 hrs .......~~(,_,"> 0.16/1.08 hrs ........~~(,_,"> 0.17/1.04 hrs .........~~(,_,"> 0.20/1.12 hrs ..........~~(,_,"> 0.22/1.11 hrs ...........~~(,_,"> 0.24/1.10 hrs ............~~(,_,"> 0.25/1.09 hrs .............~~(,_,"> 0.27/1.07 hrs ..............~~(,_,"> 0.29/1.08 hrs ...............~~(,_,"> 0.30/1.08 hrs ................~~(,_,"> 0.32/1.08 hrs .................~~(,_,"> 0.34/1.07 hrs ..................~~(,_,"> 0.35/1.06 hrs ...................~~(,_,"> 0.37/1.06 hrs ....................~~(,_,"> 0.38/1.05 hrs .....................~~(,_,"> 0.39/1.04 hrs ......................~~(,_,"> 0.41/1.03 hrs .......................~~(,_,"> 0.43/1.04 hrs ........................~~(,_,"> 0.45/1.04 hrs .........................~~(,_,"> 0.46/1.03 hrs ..........................~~(,_,"> 0.48/1.03 hrs ...........................~~(,_,"> 0.49/1.02 hrs ............................~~(,_,"> 0.52/1.04 hrs .............................~~(,_,"> 0.54/1.04 hrs ..............................~~(,_,"> 0.56/1.05 hrs ...............................~~(,_,"> 0.57/1.05 hrs ................................~~(,_,"> 0.60/1.06 hrs .................................~~(,_,"> 0.63/1.08 hrs ..................................~~(,_,"> 0.64/1.07 hrs ...................................~~(,_,"> 0.67/1.09 hrs ....................................~~(,_,"> 0.69/1.10 hrs .....................................~~(,_,"> 0.71/1.10 hrs ......................................~~(,_,"> 0.72/1.09 hrs .......................................~~(,_,"> 0.74/1.08 hrs ........................................~~(,_,"> 0.75/1.08 hrs .........................................~~(,_,"> 0.76/1.07 hrs ..........................................~~(,_,"> 0.77/1.06 hrs ...........................................~~(,_,"> 0.79/1.07 hrs ............................................~~(,_,"> 0.82/1.08 hrs .............................................~~(,_,"> 0.86/1.10 hrs ..............................................~~(,_,"> 0.88/1.11 hrs ...............................................~~(,_,"> 0.90/1.11 hrs ................................................~~(,_,"> 0.91/1.10 hrs .................................................~~(,_,"> 0.92/1.09 hrs ..................................................~~(,_,"> 0.94/1.09 hrs ...................................................~~(,_,"> 0.96/1.09 hrs ....................................................~~(,_,"> 0.97/1.09 hrs .....................................................~~(,_,"> 0.99/1.08 hrs ......................................................~~(,_,"> 1.00/1.08 hrs .......................................................~~(,_,"> 1.02/1.08 hrs ........................................................~~(,_,"> 1.03/1.07 hrs .........................................................~~(,_,"> 1.05/1.08 hrs ..........................................................~~(,_,"> 1.07/1.07 hrs ...........................................................~~(,_,"> 1.07/1.07 hrs ............................................................~~(,_,"> + Aligning and combining frames for micrographs ... + Combining all EPS and STAR files ... + Pixel size for optics group 1: 0.73 + Done! + Written logfile in Polish/job077/logfile.pdf + Written new particle STAR file in Polish/job077/shiny.star