RELION version: 4.0-beta-1-commit-39b2fb Precision: BASE=double + Follower 1 runs on host = lg26.lmb.internal + Follower 2 runs on host = lg26.lmb.internal + Follower 3 runs on host = lg26.lmb.internal === RELION MPI setup === + Number of MPI processes = 4 + Leader (0) runs on host = lg26.lmb.internal ================= + Run autopicking on the following micrographs: * MotionCorr/job003/Tiff/EER/GridSquare_11092862/Data/FoilHole_11096533_Data_11093770_11093772_20210911_110152_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092869/Data/FoilHole_11095348_Data_11093770_11093772_20210911_111526_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092869/Data/FoilHole_11095306_Data_11093767_11093769_20210911_111344_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092869/Data/FoilHole_11095348_Data_11093767_11093769_20210911_111519_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092862/Data/FoilHole_11096453_Data_11093773_11093775_20210911_104717_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092862/Data/FoilHole_11096517_Data_11093767_11093769_20210911_104424_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092862/Data/FoilHole_11096357_Data_11093776_11093778_20210911_103744_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092862/Data/FoilHole_11096404_Data_11093776_11093778_20210911_110445_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092862/Data/FoilHole_11096517_Data_11093776_11093778_20210911_104448_EER.mrc * MotionCorr/job003/Tiff/EER/GridSquare_11092862/Data/FoilHole_11096454_Data_11093773_11093775_20210911_104306_EER.mrc + Will use topaz for picking particle coordinates + Setting topaz downscale factor to 7 (assuming resnet8 model and 2*particle_diameter receptive box) + Setting topaz radius to 17 downscaled pixels (based on particle_diameter/2) Autopicking ... 000/??? sec ~~(,_,"> [oo] 8/ 24 sec ...................~~(,_,"> 17/ 25 sec .......................................~~(,_,"> 28/ 28 sec ............................................................~~(,_,"> Generating logfile.pdf and output list of coordinate files ... 000/??? sec ~~(,_,"> [oo] 0/ 0 sec ............................................................~~(,_,"> Total number of particles from 10 micrographs is 228 i.e. on average there were 23 particles per micrograph but for Topaz picking, you will want to select on rlnAutopickFigureOfMerit in the Particle extraction. Saved list with 9 coordinate files in: AutoPick/job048/autopick.star Done! Written: AutoPick/job048/logfile.pdf