[fmb367.lmb.internal:265718] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) [fmb367.lmb.internal:265717] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) [fmb367.lmb.internal:265720] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) [fmb367.lmb.internal:265719] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) WARNING: You did not specify --angpix_ref. The pixel size in the image header of WARNING: You did not specify --angpix_ref. The pixel size in the image header of Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. WARNING: You did not specify --angpix_ref. The pixel size in the image header of Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. WARNING: You did not specify --angpix_ref. The pixel size in the image header of Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 [fmb368.lmb.internal:77901] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) [fmb368.lmb.internal:77902] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) [fmb368.lmb.internal:77900] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) [fmb368.lmb.internal:77899] mca_base_component_repository_open: unable to open mca_btl_openib: libosmcomp.so.3: cannot open shared object file: No such file or directory (ignored) WARNING: You did not specify --angpix_ref. The pixel size in the image header of Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. WARNING: You did not specify --angpix_ref. The pixel size in the image header of Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. WARNING: You did not specify --angpix_ref. The pixel size in the image header of Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. WARNING: You did not specify --angpix_ref. The pixel size in the image header of Refine3D/job099/run_half1_class001_unfil.mrc, 0.824 A/px, is used. WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the AutoPick pixel size (--coords_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824 WARNING: pixel size (--angpix) is smaller than the movie pixel size (--movie_angpix) This is probably a rounding error. It is recommended to set --angpix (0.824) to at least 0.824