++++ Executing new job on Sat Nov 27 10:51:28 2021 ++++ with the following command(s): `which relion_refine_mpi` --o Refine3D/job011/run --auto_refine --split_random_halves --i Extract/job010/particles.star --ref ini4refine/type1-650.mrc --firstiter_cc --ini_high 10 --dont_combine_weights_via_disc --scratch_dir /ssd/fia-smiles --pool 30 --pad 2 --skip_gridding --ctf --particle_diameter 220 --flatten_solvent --zero_mask --oversampling 1 --healpix_order 3 --auto_local_healpix_order 4 --offset_range 5 --offset_step 2 --sym C1 --low_resol_join_halves 40 --norm --scale --helix --helical_outer_diameter 180 --helical_nr_asu 3 --helical_twist_initial -1.32 --helical_rise_initial 4.75 --helical_z_percentage 0.2 --sigma_tilt 5 --sigma_psi 3.33333 --sigma_rot 0 --helical_keep_tilt_prior_fixed --j 6 --gpu "0:1:2:3" --pipeline_control Refine3D/job011/ ++++ ++++ Executing new job on Sat Nov 27 10:57:07 2021 ++++ with the following command(s): `which relion_refine_mpi` --continue Refine3D/job011/run_it001_optimiser.star --o Refine3D/job011/run --dont_combine_weights_via_disc --scratch_dir /ssd/fia-smiles2 --pool 30 --pad 2 --skip_gridding --particle_diameter 220 --j 6 --gpu "0:1:2:3" --pipeline_control Refine3D/job011/ ++++