Sender: LSF System <lsfadmin@cryowks1_10g>
Subject: Job 14302: <cryosparc_P75_J1193> in cluster <cryoem> Done

Job <cryosparc_P75_J1193> was submitted from host <cryowks1_10g> by user <cryosparc_user> in cluster <cryoem> at Mon Mar  2 09:35:59 2020
Job was executed on host(s) <cryowks1_10g>, in queue <cryosparc>, as user <cryosparc_user> in cluster <cryoem> at Mon Mar  2 10:05:38 2020
</data/home/cryosparc_user> was used as the home directory.
</data/home/cryosparc_user/cryosparc2_master> was used as the working directory.
Started at Mon Mar  2 10:05:38 2020
Terminated at Mon Mar  2 22:51:59 2020
Results reported at Mon Mar  2 22:51:59 2020

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
#!/usr/bin/env bash
#### cryoSPARC cluster submission script template for PBS
## Available variables:
## /data/home/cryosparc_user/cryosparc2_worker/bin/cryosparcw run --project P75 --job J1193 --master_hostname amc-cryowks1 --master_command_core_port 39002 > /data/home/bonilla/Desktop/Projects/P75/J1193/job.log 2>&1             - the complete command string to run the job
## 12            - the number of CPUs needed
## 2            - the number of GPUs needed. 
##                            Note: the code will use this many GPUs starting from dev id 0
##                                  the cluster scheduler or this script have the responsibility
##                                  of setting CUDA_VISIBLE_DEVICES so that the job code ends up
##                                  using the correct cluster-allocated GPUs.
## 32.0             - the amount of RAM needed in GB
## /data/home/bonilla/Desktop/Projects/P75/J1193        - absolute path to the job directory
## /data/home/bonilla/Desktop/Projects/P75    - absolute path to the project dir
## /data/home/bonilla/Desktop/Projects/P75/J1193/job.log   - absolute path to the log file for the job
## /data/home/cryosparc_user/cryosparc2_worker/bin/cryosparcw    - absolute path to the cryosparc worker command
## --project P75 --job J1193 --master_hostname amc-cryowks1 --master_command_core_port 39002           - arguments to be passed to cryosparcw run
## P75        - uid of the project
## J1193            - uid of the job
## Steve Bonilla Rosales        - name of the user that created the job (may contain spaces)
## STEVE.BONILLAROSALES@CUANSCHUTZ.EDU - cryosparc username of the user that created the job (usually an email)
##
## What follows is a simple PBS script:

#BSUB -J cryosparc_P75_J1193
#BUSB -n 12
#BSUB -gpu "num=2:j_exclusive=yes"
#BSUB -R "rusage[mem=32.0]"
#BUSB -R "span[hosts=1]"
#BSUB -o /data/home/bonilla/Desktop/Projects/P75/J1193/
#BSUB -e /data/home/bonilla/Desktop/Projects/P75/J1193/
#BSUB -q cryosparc

#available_devs=""
#for devidx in $(seq 0 3);
#do
#    if [[ -z $(nvidia-smi -i $devidx --query-compute-apps=pid --format=csv,noheader) ]] ; then
#        if [[ -z "$available_devs" ]] ; then
#            available_devs=$devidx
#        else
#            available_devs=$available_devs,$devidx
#        fi
#    fi
#done
#export CUDA_VISIBLE_DEVICES=$available_devs
#USER Steve Bonilla Rosales
echo $LSB_JOBID >> /tmp/cuda_visible.txt
sleep 10
CUDA_VISIBLE_DEVICES=$( /opt/relion/scripts/cryosparc_cuda.sh $LSB_JOBID )
export CUDA_VISIBLE_DEVICES
export CUDA_HOME=/data/software/cuda

(... more ...)
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time :                                   130159.91 sec.
    Max Memory :                                 15 GB
    Average Memory :                             8.50 GB
    Total Requested Memory :                     32.00 GB
    Delta Memory :                               17.00 GB
    Max Swap :                                   -
    Max Processes :                              14
    Max Threads :                                73
    Run time :                                   45981 sec.
    Turnaround time :                            47760 sec.

The output (if any) follows:

2,3