job_type == 5
is_continue == false
Pixel size (A) == 1
Diameter background circle (pix):  == -1
Stddev for black dust removal:  == -1
Input coordinates:  == Import/job012/coords_suffix_automatch.star
Cut helical tubes into segments? == Yes
Coordinates are start-end only? == Yes
Extract helical segments? == No
Invert contrast? == Yes
Normalize particles? == Yes
Submit to queue? == Yes
OR: re-center refined coordinates?  == No
OR re-extract refined particles?  == Yes
Rescale particles? == Yes
Reset the refined offsets to zero?  == No
Manually set pixel size?  == No
Particle box size (pix): == 300
Refined particles STAR file:  == Select/job020/particles.star
Use bimodal angular priors? == Yes
Number of asymmetrical units: == 1
Helical rise (A): == 1
Tube diameter (A):  == 200
Minimum dedicated cores per node: == 1
Number of MPI procs: == 240
Additional arguments: == 
Queue submit command: == sbatch
No. of nodes == 10
Standard submission script: == /ru-auth/local/home/scai/relion_qsub.csh
Queue name:  == hpc
Re-center on X-coordinate (in pix):  == 0
Re-center on Y-coordinate (in pix):  == 0
Re-center on Z-coordinate (in pix):  == 0
Re-scaled size (pixels):  == 50
micrograph STAR file:  == Select/job010/micrographs.star
Stddev for white dust removal:  == -1