<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10437" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2020-06-08</depositionDate>
            <releaseDate>2021-11-08</releaseDate>
            <updateDate>2021-11-08</updateDate>
        </keyDates>
        <title>Single-particle cryo-EM of the full-length merozoite surface protein 1 from Plasmodium falciparum</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-3550-6274</authorORCID>
            <firstName>Mikhail</firstName>
            <lastName>Kudryashev</lastName>
            <organization type="academic">Max Planck Institute of Biophysics</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hesse</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-3550-6274</authorORCID>
            <firstName>Mikhail</firstName>
            <lastName>Kudryashev</lastName>
            <organization type="academic">Max Planck Institute of Biophysics</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hesse</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-6799-2399">Dijkman PM</author>
            <author>Marzluf T</author>
            <author authorORCID="0000-0002-6478-476X">Zhang Y</author>
            <author>Chang SYS</author>
            <author authorORCID="0000-0001-9321-2069">Helm D</author>
            <author authorORCID="0000-0002-0220-6526">Lanzer M</author>
            <author>Bujard H</author>
            <author authorORCID="0000-0003-3550-6274">Kudryashev M</author>
        </authorsList>
        <datasetSize units="TB">34.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-10437</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-11150</emdbEntry>
            <emdbEntry>EMD-11151</emdbEntry>
            <emdbEntry>EMD-11152</emdbEntry>
            <emdbEntry>EMD-11153</emdbEntry>
            <emdbEntry>EMD-11154</emdbEntry>
            <emdbEntry>EMD-11155</emdbEntry>
            <emdbEntry>EMD-11156</emdbEntry>
            <emdbEntry>EMD-11157</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-6799-2399" order="1">Dijkman PM</author>
                    <author order="2">Marzluf T</author>
                    <author authorORCID="0000-0002-6478-476X" order="3">Zhang Y</author>
                    <author order="4">Chang SYS</author>
                    <author authorORCID="0000-0001-9321-2069" order="5">Helm D</author>
                    <author authorORCID="0000-0002-0220-6526" order="6">Lanzer M</author>
                    <author order="7">Bujard H</author>
                    <author authorORCID="0000-0003-3550-6274" order="8">Kudryashev M</author>
                    <title>Structure of the merozoite surface protein 1 from Plasmodium falciparum</title>
                    <journal>Science advances</journal>
                    <journalAbbreviation>Sci Adv</journalAbbreviation>
                    <country></country>
                    <issue>23</issue>
                    <volume>7</volume>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/sciadv.abg0465</externalReferences>
                    <externalReferences type="pubmed">34078606</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned movies of MSP-1</name>
        <directory>/data/micrographs/MSP1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3734</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.073</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.073</pixelHeight>
        </dimensions>
        <details>Unaligned, gain-corrected, 40-frame movies, recorded automatically with EPU, using K2 camera in counting mode on a Titan Krios microscope operated at 300 kV at a nominal magnification of 130 000, corresponding to a pixel size of 1.073 Å. The total electron dose per micrograph: ~64 e-/Å^2.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned movies of hdMSP-1 (dataset 1)</name>
        <directory>/data/micrographs/hdMSP1-dataset1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1685</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.077</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.077</pixelHeight>
        </dimensions>
        <details>Unaligned, gain-corrected, 40-frame movies, recorded automatically with EPU, using K2 camera in counting mode on a Titan Krios microscope operated at 300 kV at a nominal magnification of 130 000, corresponding to a pixel size of 1.077 Å. The total electron dose per micrograph: ~60 e-/Å^2.
Datasets 1-4 were combined for reconstruction of hdMSP-1.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned movies of hdMSP-1 (dataset 2)</name>
        <directory>/data/micrographs/hdMSP1-dataset2</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3560</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.077</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.077</pixelHeight>
        </dimensions>
        <details>Unaligned, gain-corrected, 40-frame movies, recorded automatically with EPU, using K2 camera in counting mode on a Titan Krios microscope operated at 300 kV at a nominal magnification of 130 000, corresponding to a pixel size of 1.077 Å. The total electron dose per micrograph: ~60 e-/Å^2.
Datasets 1-4 were combined for reconstruction of hdMSP-1.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned movies of hdMSP-1 (dataset 3)</name>
        <directory>/data/micrographs/hdMSP1-dataset3</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>5864</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.077</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.077</pixelHeight>
        </dimensions>
        <details>Unaligned, gain-corrected, 40-frame movies, recorded automatically with EPU, using K2 camera in counting mode on a Titan Krios microscope operated at 300 kV at a nominal magnification of 130 000, corresponding to a pixel size of 1.077 Å. The total electron dose per micrograph: ~60 e-/Å^2.
Datasets 1-4 were combined for reconstruction of hdMSP-1.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned movies of hdMSP-1 (dataset 4)</name>
        <directory>/data/micrographs/hdMSP1-dataset4</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1393</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.077</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.077</pixelHeight>
        </dimensions>
        <details>Unaligned, gain-corrected, 40-frame movies, recorded automatically with EPU, using K2 camera in counting mode on a Titan Krios microscope operated at 300 kV at a nominal magnification of 130 000, corresponding to a pixel size of 1.077 Å. The total electron dose per micrograph: ~60 e-/Å^2.
Datasets 1-4 were combined for reconstruction of hdMSP-1. Dataset 4 was collected at 15 degrees tilt.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for hdMSP-1 conformation 1</name>
        <directory>/data/particles/hdMSP1_conf1</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>271763</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.077</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.077</pixelHeight>
        </dimensions>
        <details>Final 271,763 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for hdMSP-1 (conformation 1); box size 288 pixels, 1.077 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for hdMSP-1 conformation 2</name>
        <directory>/data/particles/hdMSP1_conf2</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>182515</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.077</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.077</pixelHeight>
        </dimensions>
        <details>Final 182,515 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for hdMSP-1 (conformation 2); box size 288 pixels, 1.077 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for MSP-1 main conformation</name>
        <directory>/data/particles/MSP1_mainfonf</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>141838</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.073</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.073</pixelHeight>
        </dimensions>
        <details>Final 141,838 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for MSP-1 (main conformation); box size 288 pixels, 1.073 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for MSP-1 alternative conformation 1</name>
        <directory>/data/particles/MSP1_altconf1</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>112939</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.073</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.073</pixelHeight>
        </dimensions>
        <details>Final 112,939 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for MSP-1 (alternative conformation 1); box size 288 pixels, 1.073 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for MSP-1 alternative conformation 2</name>
        <directory>/data/particles/MSP1_altconf2</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>118878</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.073</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.073</pixelHeight>
        </dimensions>
        <details>Final 118,878 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for MSP-1 (alternative conformation 2); box size 288 pixels, 1.073 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for MSP-1 alternative conformation 3</name>
        <directory>/data/particles/MSP1_altconf3</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>124774</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.073</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.073</pixelHeight>
        </dimensions>
        <details>Final 124,774 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for MSP-1 (alternative conformation 3); box size 288 pixels, 1.073 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for MSP-1 alternative conformation 4</name>
        <directory>/data/particles/MSP1_altconf4</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>116037</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.073</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.073</pixelHeight>
        </dimensions>
        <details>Final 116,037 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for MSP-1 (alternative conformation 4); box size 288 pixels, 1.073 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Final particle stack for MSP-1 alternative conformation 5</name>
        <directory>/data/particles/MSP1_altconf5</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>75620</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>288</imageWidth>
            <pixelWidth>1.073</pixelWidth>
            <imageHeight>288</imageHeight>
            <pixelHeight>1.073</pixelHeight>
        </dimensions>
        <details>Final 75,620 particle stack and corresponding starfile (converted from cryoSPARC particle file using USCF pyem) for MSP-1 (alternative conformation 5); box size 288 pixels, 1.073 Å/pixel.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
