<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11327" schemaVersion="0.64" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-11-22</depositionDate>
            <releaseDate>2024-02-01</releaseDate>
            <updateDate>2024-02-01</updateDate>
        </keyDates>
        <title>Purified tails from bacteriophage T5 after interaction with E. coli receptor FhuA inserted into nanodiscs - dataset 2</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-9226-3382</authorORCID>
            <firstName>Romain</firstName>
            <lastName>Linares</lastName>
            <organization type="academic">Institut de Biologie Structurale</organization>
            <street>71 avenue des martyrs</street>
            <townOrCity>GRENOBLE</townOrCity>
            <stateOrProvince>-</stateOrProvince>
            <country>France</country>
            <postOrZipCode>38044 CEDEX9</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9226-3382</authorORCID>
            <firstName>Romain</firstName>
            <lastName>Linares</lastName>
            <organization type="academic">Institut de Biologie Structurale</organization>
            <street>71 avenue des Martyrs</street>
            <townOrCity>GRENOBLE</townOrCity>
            <country>France</country>
            <postOrZipCode>38044 CEDEX 9</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-9226-3382">Linares R</author>
            <author>Arnaud C</author>
            <author authorORCID="0000-0002-6957-0875">Effantin G</author>
            <author authorORCID="0000-0001-7777-2381">Darnault C</author>
            <author>Epalle NH</author>
            <author authorORCID="0000-0002-5910-4707">Erba EB</author>
            <author authorORCID="0000-0002-1459-3201">Schoehn G</author>
            <author authorORCID="0000-0002-4382-0434">Breyton C</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">3.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-11327</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>virus</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13953</emdbEntry>
            <emdbEntry>EMD-14799</emdbEntry>
            <emdbEntry>EMD-14800</emdbEntry>
            <emdbEntry>EMD-14873</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0001-9226-3382" order="1">Linares R</author>
                    <author order="2">Arnaud C</author>
                    <author authorORCID="0000-0002-6957-0875" order="3">Effantin G</author>
                    <author authorORCID="0000-0001-7777-2381" order="4">Darnault C</author>
                    <author order="5">Epalle NH</author>
                    <author authorORCID="0000-0002-5910-4707" order="6">Erba EB</author>
                    <author authorORCID="0000-0002-1459-3201" order="7">Schoehn G</author>
                    <author authorORCID="0000-0002-4382-0434" order="8">Breyton C</author>
                    <editor order="1"> </editor>
                    <title>Structural basis of bacteriophage T5 infection trigger and &lt;i&gt;E. coli&lt;/i&gt; cell wall perforation</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2022</year>
                    <externalReferences type="doi">10.1101/2022.09.20.507954</externalReferences>
                    <details>This is a cryo-EM sample of purified tails from bacteriophage T5, after incubation with E.coli bacterial receptor FhuA inserted into nanodiscs.
This is the second of two separate data collections done on this sample.

Typically, 3.5 µL of T5 tail incubated with FhuA-nanodisc sample were deposited on a freshly glow discharged (25 mA, 30 sec) Cu/Rh 300 mesh Quantifoil R 2/1 EM grids and plunge frozen in nitrogen-cooled liquid ethane using a ThermoFisher Mark IV Vitrobot device (100% humidity, 20°C, 5s blotting time, blot force 0)

The dataset contains 5733 40-frame movie, acquired on a Thermo Fisher Scientific Titan Krios G3 TEM (European Synchrotron Radiation Facility, Grenoble, France) operated at 300 kV and equipped with a Gatan Quantum energy filter coupled to a Gatan K2 summit direct electron detector. Automated data collection was performed using Thermo Fisher Scientific EPU software, with a typical defocus range of -1.0 to -3.0 µm and a total dose of 40 e-/Å2 per movie. A nominal magnification of 105.000x was used, resulting in a calibrated pixel size at the specimen level of 1.351 Å.</details>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-9226-3382" order="1">Linares R</author>
                    <author order="2">Arnaud CA</author>
                    <author authorORCID="0000-0002-6957-0875" order="3">Effantin G</author>
                    <author authorORCID="0000-0001-7777-2381" order="4">Darnault C</author>
                    <author order="5">Epalle NH</author>
                    <author authorORCID="0000-0002-5910-4707" order="6">Boeri Erba E</author>
                    <author authorORCID="0000-0002-1459-3201" order="7">Schoehn G</author>
                    <author authorORCID="0000-0002-4382-0434" order="8">Breyton C</author>
                    <editor order="1"> </editor>
                    <title>Structural basis of bacteriophage T5 infection trigger and &lt;i&gt;E. coli&lt;/i&gt; cell wall perforation</title>
                    <journal>Science advances</journal>
                    <journalAbbreviation>Sci Adv</journalAbbreviation>
                    <country></country>
                    <issue>12</issue>
                    <volume>9</volume>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/sciadv.ade9674</externalReferences>
                    <externalReferences type="pubmed">36961893</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of phage T5 tails pre-incubated with bacteria receptor FhuA inserted in nanodiscs</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>5733</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.351</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.351</pixelHeight>
        </dimensions>
        <details></details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
