<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11372" public="true">
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        <keyDates>
            <depositionDate>2023-01-09</depositionDate>
            <releaseDate>2023-01-25</releaseDate>
            <updateDate>2023-01-25</updateDate>
        </keyDates>
        <title>Ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-1332-6002</authorORCID>
            <firstName>Kimon</firstName>
            <lastName>Lemonidis</lastName>
            <organization type="academic">School of Molecular Biosciences, College of Medical, Veterinary &amp; Life Sciences, University of Glasgow</organization>
            <street>Room 309, Davidson building</street>
            <townOrCity>Glasgow</townOrCity>
            <stateOrProvince>Scotland</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>G12 8QQ</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-4289-4810</authorORCID>
            <firstName>Helen</firstName>
            <lastName>Walden</lastName>
            <organization type="academic">School of Molecular Biosciences, College of Medical, Veterinary &amp; Life Sciences, University of Glasgow</organization>
            <street>Room 332, Davidson building</street>
            <townOrCity>Glasgow</townOrCity>
            <stateOrProvince>Scotland</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>G12 8QQ</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-1332-6002">Lemonidis K</author>
            <author authorORCID="0000-0002-0799-3450">Rennie ML</author>
            <author authorORCID="0000-0003-3665-2484">Arkinson C</author>
            <author authorORCID="0000-0001-7814-5865">Chaugule VK</author>
            <author authorORCID="0000-0002-9658-4308">Clarke M</author>
            <author authorORCID="0000-0001-7808-605X">Streetley J</author>
            <author authorORCID="0000-0002-4289-4810">Walden H</author>
        </authorsList>
        <datasetSize units="TB">2.9</datasetSize>
        <entryDOI>10.6019/EMPIAR-11372</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-14694</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-1332-6002" order="1">Lemonidis K</author>
                    <author authorORCID="0000-0002-0799-3450" order="2">Rennie ML</author>
                    <author authorORCID="0000-0003-3665-2484" order="3">Arkinson C</author>
                    <author authorORCID="0000-0001-7814-5865" order="4">Chaugule VK</author>
                    <author authorORCID="0000-0002-9658-4308" order="5">Clarke M</author>
                    <author authorORCID="0000-0001-7808-605X" order="6">Streetley J</author>
                    <author authorORCID="0000-0002-4289-4810" order="7">Walden H</author>
                    <title>Structural and biochemical basis of interdependent FANCI-FANCD2 ubiquitination</title>
                    <journal>The EMBO journal</journal>
                    <journalAbbreviation>EMBO J</journalAbbreviation>
                    <country>United Kingdom</country>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.15252/embj.2022111898</externalReferences>
                    <externalReferences type="pubmed">36385258</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame movies of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA</name>
        <directory>/data/dataset_1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>5414</numImagesOrTiltSeries>
        <framesPerImage>45</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.023</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.023</pixelHeight>
        </dimensions>
        <details>Imaging was performed on JEOL CRYO ARM 300 microscope, equipped with a DE64 detector (Magnification: 120,000x, acceleration voltage: 300 kV, spherical aberration: 2.7 mm, electron exposure: 45.2 e/Å^2). Movies were recorded in MRC format and were subsequently LZW compressed in TIFF format using RELION. For CryoSPARC processing, the corresponding gain reference file needs to be flipped in both Y and X axes.</details>
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    <imageSet>
        <name>Unaligned multi-frame movies of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA (energy filtered imaging)</name>
        <directory>/data/dataset_2</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>5814</numImagesOrTiltSeries>
        <framesPerImage>45</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.023</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.023</pixelHeight>
        </dimensions>
        <details>Imaging was performed on JEOL CRYO ARM 300 microscope, equipped with a DE64 detector and an in-column omega filter (Magnification: 120,000x, acceleration voltage: 300 kV, spherical aberration: 2.7 mm, electron exposure: 46.8 e/Å^2, slit width: 30 eV). Movies were recorded in MRC format and were subsequently LZW compressed in TIFF format using RELION. For CryoSPARC processing, the corresponding gain reference file needs to be flipped in Y axis.</details>
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