<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11580" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-02-03</depositionDate>
            <releaseDate>2024-08-26</releaseDate>
            <updateDate>2024-08-26</updateDate>
        </keyDates>
        <title>Molecular model of a bacterial flagellar motor in situ reveals a “parts-list” of protein adaptations to increase torque</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-6413-9835</authorORCID>
            <firstName>Morgan</firstName>
            <lastName>Beeby</lastName>
            <organization type="academic">Imperial College London</organization>
            <street>South Kensington</street>
            <townOrCity>London</townOrCity>
            <stateOrProvince>Greater London</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>SW7 2AZ</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-6413-9835</authorORCID>
            <firstName>Morgan</firstName>
            <lastName>Beeby</lastName>
            <organization type="academic">Imperial College London</organization>
            <street>South Kensington</street>
            <townOrCity>London</townOrCity>
            <stateOrProvince>Greater London</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>SW7 2AZ</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-6413-9835">Beeby M</author>
            <author authorORCID="0000-0001-9265-7517">Cohen EJ</author>
            <author authorORCID="0000-0001-6364-1874">Drobnič T</author>
            <author authorORCID="0000-0002-3791-2447">Nans A</author>
            <author authorORCID="0000-0002-0387-2862">Rosenthal PB</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Medical Research Council (MRC, United Kingdom)</fundingBody>
                <code>MR/V000799/1</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Human Frontier Science Program (HFSP)</fundingBody>
                <code>RGP0028/2021-HOCHBERG</code>
                <country>France</country>
            </grantReference>
            <grantReference>
                <fundingBody>Biotechnology and Biological Sciences Research Council (BBSRC)</fundingBody>
                <code>BB/M011178/1</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Cancer Research UK</fundingBody>
                <code>FC001143</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Medical Research Council (MRC, United Kingdom)</fundingBody>
                <code>FC001143</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>FC001143</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">25.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-11580</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-16723</emdbEntry>
            <emdbEntry>EMD-16724</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0000-0001-6413-9835" order="1">Beeby M</author>
                    <author authorORCID="0000-0001-6364-1874" order="2">Drobnič T</author>
                    <title>Molecular model of a bacterial flagellar motor in situ reveals a “parts-list” of protein adaptations to increase torque</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Dataset 2 (“K2”)</name>
        <directory>/data/BigKahuna/Movies/2020-10-01_K2_dataset</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>43006</numImagesOrTiltSeries>
        <framesPerImage>32</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>2.2</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>2.2</pixelHeight>
        </dimensions>
        <details>Campylobacter_K2_20201001_151628_EPU

64,000 np EFTEM
2.2 A/pix
20eV slit
Spot 7
1.50 um beam size
17 s exp
32 frames
Dose rate: 14 e/p/s, 2.89 e/A2/s
50 e/A2 total dose
1.53 e/A2/frame
-1.5 um to -3.0 um defocus
Autofocus at 105,000 nP (1.05 um beam size)
0.6/1 quantifoil grids
To detect holes in EPU, use 9mm defocus in GridSq mode and "allow dark holes"
One shot per hole</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 1 (“F3”)</name>
        <directory>/data/BigKahuna/Movies/2020-06-11_Falcon3_dataset</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>8775</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.748</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.748</pixelHeight>
        </dimensions>
        <details>campylobacter_mini_20200611_131510_EPU

47,000 nP
1.75 A/pix
50um C2
100um obj
spot 4
beam size: 1.3um
defocus range: -1.5 to -3.0
1.02 s exposure
10 movie frames
dose rate: 153 e/p/s
total dose: 50 e/A2
dose per movie frame: 5 e/A2/frame</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
