<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11722" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-10-11</depositionDate>
            <releaseDate>2024-08-23</releaseDate>
            <updateDate>2024-08-23</updateDate>
        </keyDates>
        <title>Cyo-EM structure of wildtype non-gastric proton pump in the presence of Na+, AlF and ADP</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-2681-5921</authorORCID>
            <firstName>Kazuhiro</firstName>
            <lastName>Abe</lastName>
            <organization type="academic">Cellular and Structural Physiology Institute, Nagoya University</organization>
            <street>1, Furo-cho, Chikusa-ku</street>
            <townOrCity>Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>464-8601</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-2681-5921</authorORCID>
            <firstName>Kazuhiro</firstName>
            <lastName>Abe</lastName>
            <organization type="academic">Cellular and Structural Physiology Institute, Nagoya University</organization>
            <street>1, Furo-cho, Chikusa-ku</street>
            <townOrCity>Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>464-8601</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-2681-5921">Abe K</author>
            <author>Artigas P</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.7</datasetSize>
        <entryDOI>10.6019/EMPIAR-11722</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-35488</emdbEntry>
            <emdbEntry>EMD-35489</emdbEntry>
            <emdbEntry>EMD-35491</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Abe K</author>
                    <author order="2">Nishizawa T</author>
                    <author order="3">Artigas P</author>
                    <title>An unusual conformation from Na + -sensitive non-gastric proton pump mutants reveals molecular mechanisms of cooperative Na + -binding.</title>
                    <journal>Biochimica Biophysica Acta Molecular Cell Research</journal>
                    <journalAbbreviation>Biochim Biophys Acta Mol Cell Res</journalAbbreviation>
                    <country></country>
                    <volume>1870</volume>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.bbamcr.2023.119543</externalReferences>
                    <externalReferences type="pubmed">37482134</externalReferences>
                    <details>non-gastric proton pump WT E2-Pi state in the presence of Na+ AlF and ADP.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>K3 movies for non gastric proton pump WT with Na, AlF and ADP</name>
        <directory>/data/8IJL/</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1723</numImagesOrTiltSeries>
        <framesPerImage>64</framesPerImage>
        <frameRange>
            <frameRangeMin>2</frameRangeMin>
            <frameRangeMax>64</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- Please use 'movie_gain_ref_estimate.mrc' as a gain reference without rotation or flipping in RELION.
- The gain reference (movie_gain_ref_estimate.mrc) was generated with relion_estimate_gain by averaging many frames.
- The flux is 1.06 e/A2/frame.
- Cs is 2.7 mm.
- Four digits in the file name represent image shift directions.
- Movies were recorded with 3x3 image shift but grouping was not applied during processing.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>K3 movies for non gastric proton pump K794A mutant in NaE1AMPPCP state</name>
        <directory>/data/8IJM/</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3204</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>2</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- Please use 'CountRef_abe1-3_11-001_0000_Sep09_09.26.25.mrc' as a gain reference without rotation or flipping in RELION.
- The flux is 1.06 e/A2/frame.
- Cs is 2.7 mm.
- Four digits in the file name represent image shift directions.
- Movies were recorded with 3x3 image shift but grouping was not applied during processing.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>K3 movies for non gastric proton pump K794S mutant in NaE1AMPPCP state</name>
        <directory>/data/EMD-35491</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2187</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>2</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- Please use 'CountRef_abe2-1_22-001_0000_Sep10_01.28.37.mrc' as a gain reference without rotation or flipping in RELION.
- The flux is 1.06 e/A2/frame.
- Cs is 2.7 mm.
- Four digits in the file name represent image shift directions.
- Movies were recorded with 3x3 image shift but grouping was not applied during processing.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
