<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12410" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-09-05</depositionDate>
            <releaseDate>2025-06-26</releaseDate>
            <updateDate>2025-06-26</updateDate>
        </keyDates>
        <title>Cryo-EM structures of SV2A in complex with antiepileptic drugs and botulinum neurotoxin A2 receptor-binding domain</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-9285-1256</authorORCID>
            <firstName>Atsushi</firstName>
            <lastName>Yamagata</lastName>
            <organization type="academic">RIKEN Center for Biosystems Dynamics Research</organization>
            <street>1-7-22 Suehiro-cho</street>
            <townOrCity>Tsurumi-ku, Yokohama</townOrCity>
            <stateOrProvince>Kanagawa</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>230-0045</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9285-1256</authorORCID>
            <firstName>Atsushi</firstName>
            <lastName>Yamagata</lastName>
            <organization type="academic">RIKEN Center for Biosystems Dynamics Research</organization>
            <street>1-7-22 Suehiro-cho</street>
            <townOrCity>Tsurumi-ku, Yokohama</townOrCity>
            <stateOrProvince>Kanagawa</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>230-0045</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-9285-1256">Yamagata A</author>
            <author>Ito K</author>
            <author authorORCID="0000-0002-0585-6305">Suzuki T</author>
            <author authorORCID="0000-0002-5242-9410">Dohmae N</author>
            <author authorORCID="0000-0002-7091-0646">Terada T</author>
            <author authorORCID="0000-0002-7997-2149">Shirouzu M</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">6.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-12410</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-36392</emdbEntry>
            <emdbEntry>EMD-36394</emdbEntry>
            <emdbEntry>EMD-36616</emdbEntry>
            <emdbEntry>EMD-36397</emdbEntry>
            <emdbEntry>EMD-36398</emdbEntry>
            <emdbEntry>EMD-36933</emdbEntry>
            <emdbEntry>EMD-36395</emdbEntry>
            <emdbEntry>EMD-36396</emdbEntry>
            <emdbEntry>EMD-36617</emdbEntry>
            <emdbEntry>EMD-36934</emdbEntry>
            <emdbEntry>EMD-36935</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-9285-1256" order="1">Yamagata A</author>
                    <author order="2">Ito K</author>
                    <author authorORCID="0000-0002-0585-6305" order="3">Suzuki T</author>
                    <author authorORCID="0000-0002-5242-9410" order="4">Dohmae N</author>
                    <author authorORCID="0000-0002-7091-0646" order="5">Terada T</author>
                    <author authorORCID="0000-0002-7997-2149" order="6">Shirouzu M</author>
                    <title>Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>15</volume>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-024-47322-4</externalReferences>
                    <externalReferences type="pubmed">38637505</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>SC2A-HcA2-LEV</name>
        <directory>/data/imageset_1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>6518</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- 8JLC / EMD-36392
- 8JLE / EMD-36394
- 8JS8 / EMD-36616
- 8JLH / EMD-36397

- Microscope: FEI TITAN Krios
- Detector: Gatan K3 BIOQUANTUM
- Acceleration voltage (kV): 300
- The pixel size in the image header (1 Å/px) is wrong. 0.83 Å/px is the calibrated value.
- Spherical aberration (Cs) : 2.7
- Nominal Defocus (μm): 0.8 - 2.0
- Average electron dose per image (e-/A2): 50.8
- Please use 'gain.mrc' as a gain reference without rotation and y-flipping.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>SV2-LEV</name>
        <directory>/data/imageset_2</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>10001</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- 8JLI / EMD-36398

- Microscope: FEI TITAN Krios
- Detector: Gatan K3 BIOQUANTUM
- Acceleration voltage (kV): 300
- The pixel size in the image header (1 Å/px) is wrong. 0.83 Å/px is the calibrated value.
- Spherical aberration (Cs) : 2.7
- Nominal Defocus (μm): 0.8 - 2.0
- Average electron dose per image (e-/A2): 50.2
- Please use 'gain.mrc' as a gain reference without rotation and y-flipping.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>SV2A-HcA2</name>
        <directory>/data/imageset_3</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>5930</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- 8JLF / EMD-36395
- 8JLG / EMD-36396
- 8JS9 / EMD-36617

- Microscope: FEI TITAN Krios
- Detector: Gatan K3 BIOQUANTUM
- Acceleration voltage (kV): 300
- The pixel size in the image header (1 Å/px) is wrong. 0.83 Å/px is the calibrated value.
- Spherical aberration (Cs) : 2.7
- Nominal Defocus (μm): 0.8 - 2.0
- Average electron dose per image (e-/A2): 50.0
- Please use 'gain.mrc' as a gain reference without rotation and y-flipping.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>SV2A-HcA2-BRV</name>
        <directory>/data/imageset_4</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>6001</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- 8K77 / EMD-36933, EMD-36934, EMD-36935

- Microscope: FEI TITAN Krios
- Detector: Gatan K3 BIOQUANTUM
- Acceleration voltage (kV): 300
- The pixel size in the image header (1 Å/px) is wrong. 0.83 Å/px is the calibrated value.
- Spherical aberration (Cs) : 2.7
- Nominal Defocus (μm): 0.8 - 2.0
- Average electron dose per image (e-/A2): 50.0
- Please use 'gain.mrc' as a gain reference without rotation and y-flipping.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
