<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12411" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-09-19</depositionDate>
            <releaseDate>2025-06-19</releaseDate>
            <updateDate>2025-06-19</updateDate>
        </keyDates>
        <title>Cryo-EM structure of F1-like ATPase for the gliding motility of Mycoplasma</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-2911-5875</authorORCID>
            <firstName>Keiichi</firstName>
            <lastName>Namba</lastName>
            <organization type="academic">Graduate School of Frontier Biosciences, Osaka University</organization>
            <street>1-3 Yamadaoka, Suita</street>
            <townOrCity>Osaka</townOrCity>
            <country>Japan</country>
            <postOrZipCode>565-0871</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-7478-7390</authorORCID>
            <firstName>Makoto</firstName>
            <lastName>Miyata</lastName>
            <organization type="academic">Graduate School of Science, Osaka Metropolitan University</organization>
            <street>3-3-138 Sugimoto, Sumiyoshi-ku</street>
            <townOrCity>Osaka</townOrCity>
            <country>Japan</country>
            <postOrZipCode>558-8585</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-2632-4375">Toyonaga T</author>
            <author authorORCID="0000-0002-7380-0127">Kawamoto A</author>
            <author authorORCID="0000-0002-5543-7459">Miyata T</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Japan Society for the Promotion of Science (JSPS)</fundingBody>
                <code>JP17H01544</code>
                <country>Japan</country>
            </grantReference>
            <grantReference>
                <fundingBody>Japan Society for the Promotion of Science (JSPS)</fundingBody>
                <code>JPMJCR19S5</code>
                <country>Japan</country>
            </grantReference>
            <grantReference>
                <fundingBody>Japan Agency for Medical Research and Development (AMED)</fundingBody>
                <code>JP22am121003</code>
                <country>Japan</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-12411</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-60718</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-2632-4375" order="1">Toyonaga T</author>
                    <author authorORCID="0000-0002-8879-6685" order="2">Kato T</author>
                    <author authorORCID="0000-0002-7380-0127" order="3">Kawamoto A</author>
                    <author authorORCID="0000-0002-5543-7459" order="4">Miyata T</author>
                    <author authorORCID="0000-0002-1689-1819" order="5">Kawakami K</author>
                    <author authorORCID="0000-0003-1273-3917" order="6">Fujita J</author>
                    <author authorORCID="0000-0003-0876-7700" order="7">Hamaguchi T</author>
                    <author authorORCID="0000-0003-2911-5875" order="8">Namba K</author>
                    <author authorORCID="0000-0002-7478-7390" order="9">Miyata M</author>
                    <title>Dimeric assembly of F&amp;lt;sub&amp;gt;1&amp;lt;/sub&amp;gt;-like ATPase for the gliding motility of &amp;lt;i&amp;gt;Mycoplasma&amp;lt;/i&amp;gt;</title>
                    <journal>Science advances</journal>
                    <journalAbbreviation>Sci Adv</journalAbbreviation>
                    <country></country>
                    <issue>9</issue>
                    <volume>11</volume>
                    <year>2025</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/sciadv.adr9319</externalReferences>
                    <externalReferences type="pubmed">40009674</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of Mycoplasma F1-like ATPase</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>7350</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.87</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.87</pixelHeight>
        </dimensions>
        <details>For gain references, use "gain.mrc" instead of the one listed in the header.
(no flipping and rotation)
- Cs: 2.7mm
- HT: 300 kV
- Pixel size: 0.87 Å/pix (If the values listed in the header are different, they should be noted.)
- Dose per frame: 2 electron/Å^2

Details
Approximately 500 images were included in the edges of the electron beam because the electron beam was shifted during the collecting dataset. These images were removed from the analysis.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
