REL 2025-01-24 2025-03-20 2025-03-20 Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos 0000-0003-0072-7122 Yunfeng Hua Shanghai Jiao Tong University School of Medicine Shanghai China 200000 0000-0003-0072-7122 Yunfeng Hua Shanghai Jiao Tong University School of Medicine Shanghai China 200000 Jiang Y Wang H Boergens K Rzepka N Wang F Hua Y 996.4 10.6019/EMPIAR-12535 SBF-SEM cell Jiang Y Wang H Boergens K Rzepka N Wang F Hua Y Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos Cell Reports Methods Cell Rep. Methods United States 2 5 2025 English 10.1016/j.crmeth.2025.100989 HuaLab-mouse-intestinal-tissue-raw /data/HuaLab-mouse-intestinal-tissue micrographs - multiframe TIFF TIFF 1000 1 UNSIGNED BYTE 6808 variable 5024 variable
HuaLab-mouse-intestinal-tissue-raw contains 1000 three-dimensional continuous images collected by Serial Section SEM, which have been aligned, contrast adjusted, and converted into 8-bit images with voxel resolution of 8nm * 8nm * 50nm.
data/HuaLab-mouse-intestinal-tissue/intestinal_mito_segmentation_h5 HuaLab-mouse-intestinal-tissue-mito-segmentation contains the h5 file for mitochondrial segmentation reconstruction of HuaLab-mouse-intestinal-tissue-raw images. Since 32-bit images are too large, the mitochondria segmentation layers are stored by h5 format. HuaLab-mouse-mouse-testis-tissue-raw /data/HuaLab_mouse_testis_tissue/raw micrographs - multiframe TIFF TIFF 2605 1 UNSIGNED BYTE 10419 variable 4884 variable
HuaLab-mouse-mouse-testis-tissue-raw contains 2605 three-dimensional continuous images collected by SBF-SEM, which have been aligned, contrast adjusted, and converted into 8-bit images with voxel resolution of 15nm * 15nm * 50nm.
data/HuaLab_mouse_testis_tissue/testis_mito_segmentation_h5 HuaLab-mouse-mouse-testis-tissue-mito-segmentation contains the h5 file for mitochondrial segmentation reconstruction of HuaLab-mouse-mouse-testis-tissue-raw images. Since 32-bit images are too large, the mitochondria segmentation layers are stored by h5 format. Hualab-DCN-A23-CBA-2M-raw /data/Hualab-DCN-A23-CBA-2M/raw micrographs - multiframe TIFF TIFF 3893 1 UNSIGNED BYTE 15303 variable 16449 variable
Hualab-DCN-A23-CBA-2M-raw contains 3893 three-dimensional continuous images collected by SBF-SEM, which have been aligned, contrast adjusted, and converted into 8-bit images with voxel resolution of 15nm * 15nm * 50nm.
data/Hualab-DCN-A23-CBA-2M/brainstem_mito_segmentation_h5 Hualab-DCN-A23-CBA-2M-brainstem-mito-segmentation contains the h5 file for mitochondrial segmentation reconstruction of Hualab-DCN-A23-CBA-2M-raw images. Since 32-bit images are too large, the mitochondria segmentation layers are stored by h5 format.