<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-13054" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-10-13</depositionDate>
            <releaseDate>2025-10-20</releaseDate>
            <updateDate>2025-10-20</updateDate>
        </keyDates>
        <title>Single particle reconstruction of LGTV TP21 strain</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-7492-1959</authorORCID>
            <firstName>Kyrylo</firstName>
            <lastName>Bisikalo</lastName>
            <organization type="academic">University of Helsinki</organization>
            <townOrCity>Helsinki</townOrCity>
            <country>Finland</country>
            <postOrZipCode>00790</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7060-5871</authorORCID>
            <firstName>Sarah</firstName>
            <middleName>Jane</middleName>
            <lastName>Butcher</lastName>
            <organization type="academic">University of Helsinki</organization>
            <townOrCity>Helsinki</townOrCity>
            <country>Finland</country>
            <postOrZipCode>00790</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-7492-1959">Bisikalo K</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Swedish Research Council</fundingBody>
                <code>2018-05851</code>
                <country>Finland</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">8.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-13054</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>virus</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-50624</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-8512-0535" order="1">Rosendal E</author>
                    <author authorORCID="0000-0002-7492-1959" order="2">Bisikalo K</author>
                    <author order="3">Willekens SMA</author>
                    <author order="4">Lindgren M</author>
                    <author order="5">Holoubek J</author>
                    <author order="6">Svoboda P</author>
                    <author order="7">Lappalainen A</author>
                    <author order="8">Könighofer E</author>
                    <author order="9">Mirgorodskaya E</author>
                    <author order="10">Nordén R</author>
                    <author order="11">Morini F</author>
                    <author order="12">Rosenbaum W</author>
                    <author order="13">Růžek D</author>
                    <author order="14">Ahlgren U</author>
                    <author order="15">Anastasina M</author>
                    <author order="16">Merits A</author>
                    <author order="17">Butcher SJ</author>
                    <author order="18">Nilsson E</author>
                    <author order="19">Överby AK</author>
                    <title>Influence of the pre-membrane and envelope proteins on structure, pathogenicity, and tropism of tick-borne encephalitis virus</title>
                    <journal>Journal of virology</journal>
                    <journalAbbreviation>J Virol</journalAbbreviation>
                    <country>Finland</country>
                    <issue>9</issue>
                    <volume>99</volume>
                    <year>2025</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1128/jvi.00870-25</externalReferences>
                    <externalReferences type="pubmed">40827915</externalReferences>
                    <details>This entry consists of 4 sets of raw movies consisting of 40 frames collected at 40 e/Å^2. One of the sets has a much higher concentration of particles.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned movies of the purified LGTV TP21 strain</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>7111</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.96</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.96</pixelHeight>
        </dimensions>
        <details>Micrographs collected of a Talos Arctica 200 keV, equipped with a Falcon 3. Spherical aberration 2.7, total dose 40. Most particles come from the smallest datset, labelled "set_airfuge"</details>
        <segmentationList/>
        <micrographsFilePattern>data/set*/Images-Disc1/*/Data/*.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
