<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="ftp://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10171" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2018-04-03</depositionDate>
            <releaseDate>2018-04-05</releaseDate>
            <updateDate>2018-04-05</updateDate>
        </keyDates>
        <title>CryoET of apoferritin with 0.5 mM TCEP single particle with spot-to-plunge time of 170ms</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-0624-5020</authorORCID>
            <firstName>Bridget</firstName>
            <lastName>Carragher</lastName>
            <organization type="academic">New York Structural Biology Center</organization>
            <street>89 Convent Avenue</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>NY</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10027</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-0624-5020</authorORCID>
            <firstName>Bridget</firstName>
            <lastName>Carragher</lastName>
            <organization type="academic">New York Structural Biology Center</organization>
            <street>89 Convent Avenue</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>NY</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10027</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-8634-2279">Noble AJ</author>
            <author>Wei H</author>
            <author>Dandey VP</author>
            <author>Zhang Z</author>
            <author>Potter CS</author>
            <author authorORCID="0000-0002-0624-5020">Carragher B</author>
        </authorsList>
        <datasetSize>31.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-10171</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-7627</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true">
                    <author authorORCID="0000-0001-8634-2279" order="1">Noble AJ</author>
                    <author order="2">Wei H</author>
                    <author order="3">Dandey VP</author>
                    <author order="4">Zhang Z</author>
                    <author order="5">Potter CS</author>
                    <author authorORCID="0000-0002-0624-5020" order="6">Carragher B</author>
                    <title>Reducing effects of particle adsorption to the air-water interface in cryoEM</title>
                    <journal>BioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <language>English</language>
                    <externalReferences type="doi">10.1101/288340</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Tilt-series image stacks</name>
        <directory>/data/SerialEM</directory>
        <category>tilt series</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3712</imageWidth>
            <pixelWidth>2.34</pixelWidth>
            <imageHeight>4984</imageHeight>
            <pixelHeight>2.34</pixelHeight>
        </dimensions>
        <details>Not frame-aligned.
.mdoc files included.</details>
        <segmentationList/>
    </imageSet>
    <imageSet>
        <name>Manual particle picking in Dynamo</name>
        <directory>/data/manual_particle_picking</directory>
        <category>particle picking</category>
        <headerFormat>DYNAMO TBL AND OMD FILES</headerFormat>
        <dataFormat>DYNAMO TBL AND OMD FILES</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Binned by 4 manual particle picking of the series0001 tomogram using Dynamo. Manual picking was performed to accurately distinguish between particles adsorbed to the air-water interfaces, non-adsorbed particles, and particles over or adsorbed to carbon.</details>
        <segmentationList/>
    </imageSet>
    <imageSet>
        <name>Appion-Protomo tilt-series alignments</name>
        <directory>/data/protomo_alignments</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3712</imageWidth>
            <pixelWidth>2.34</pixelWidth>
            <imageHeight>4984</imageHeight>
            <pixelHeight>2.34</pixelHeight>
        </dimensions>
        <details>Includes a full tilt-series alignment run for each tilt-series. To view properly, navigate to the protomo_alignments folder in Appion-Protomo.</details>
        <segmentationList/>
    </imageSet>
</entry>
