<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10244" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2019-01-24</depositionDate>
            <releaseDate>2019-02-01</releaseDate>
            <updateDate>2019-02-01</updateDate>
        </keyDates>
        <title>Cryo electron micrographs of RNA polymerase II transcribing a nucleosome</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-7420-145X</authorORCID>
            <firstName>Haruhiko</firstName>
            <lastName>Ehara</lastName>
            <organization type="academic">RIKEN</organization>
            <street>1-7-22, Suehiro-cho</street>
            <townOrCity>Tsurumi, Yokohama</townOrCity>
            <stateOrProvince>Kanagawa</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>230-0045</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-8174-8704</authorORCID>
            <firstName>Shun-ichi</firstName>
            <lastName>Sekine</lastName>
            <organization type="academic">RIKEN</organization>
            <street>1-7-22, Suehiro-cho</street>
            <townOrCity>Tsurumi, Yokohama</townOrCity>
            <stateOrProvince>Kanagawa</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>230-0045</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7412-3722</authorORCID>
            <firstName>Hitoshi</firstName>
            <lastName>Kurumizaka</lastName>
            <organization type="academic">The University of Tokyo</organization>
            <street>1-1-1, Yayoi</street>
            <townOrCity>Bunkyo-ku</townOrCity>
            <stateOrProvince>Tokyo</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>113-0032</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-5547-9598">Kujirai T</author>
            <author authorORCID="0000-0002-7420-145X">Ehara H</author>
            <author authorORCID="0000-0003-0491-6270">Fujino Y</author>
            <author authorORCID="0000-0002-7997-2149">Shirouzu M</author>
            <author authorORCID="0000-0001-8174-8704">Sekine S</author>
            <author authorORCID="0000-0001-7412-3722">Kurumizaka H</author>
        </authorsList>
        <datasetSize units="TB">1.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-10244</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-6982</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-5547-9598" order="1">Kujirai T</author>
                    <author authorORCID="0000-0002-7420-145X" order="2">Ehara H</author>
                    <author authorORCID="0000-0003-0491-6270" order="3">Fujino Y</author>
                    <author authorORCID="0000-0002-7997-2149" order="4">Shirouzu M</author>
                    <author authorORCID="0000-0001-8174-8704" order="5">Sekine S</author>
                    <author authorORCID="0000-0001-7412-3722" order="6">Kurumizaka H</author>
                    <title>Structural basis of the nucleosome transition during RNA polymerase II passage</title>
                    <journal>Science (New York, N.Y.)</journal>
                    <journalAbbreviation>Science</journalAbbreviation>
                    <country></country>
                    <issue>6414</issue>
                    <volume>362</volume>
                    <firstPage>595</firstPage>
                    <lastPage>598</lastPage>
                    <year>2018</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/science.aau9904</externalReferences>
                    <externalReferences type="pubmed">30287617</externalReferences>
                    <details>Unaligned movies collected on Talos Arctica. (0.745 A / super-resolution pixel)

We have used following MotionCor2 parameters for motion correction: 
-Bft 150 -PixSize 0.745 -Patch 5 5 -Gain SuperRef_XXXX.mrc -FtBin 2 -Kv 200 -FmDose 1.25 -Iter 10 -Throw 2 -RotGain 1 -FlipGain 2</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned movies of RNA polymerase II transcribing a nucleosome</name>
        <directory>/data/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2719</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>7420</imageWidth>
            <pixelWidth>0.745</pixelWidth>
            <imageHeight>7676</imageHeight>
            <pixelHeight>0.745</pixelHeight>
        </dimensions>
        <details>Unaligned movies in compressed TIFF (collected on 4 sessions).

The following parameters were used for MotionCor2: 
-Bft 150 -PixSize 0.745 -Patch 5 5 -Gain SuperRef_XXXX.mrc -FtBin 2 -Kv 200 -FmDose 1.25 -Iter 10 -Throw 2 -RotGain 1 -FlipGain 2</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
