<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10413" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2020-05-11</depositionDate>
            <releaseDate>2020-06-30</releaseDate>
            <updateDate>2022-02-08</updateDate>
        </keyDates>
        <title>Soft X-ray Tomography of mock-infected U2OS cells</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-8091-9057</authorORCID>
            <firstName>Maria</firstName>
            <lastName>Harkiolaki</lastName>
            <organization type="academic">Diamond Light Source</organization>
            <street>Harwell Science &amp; Innovation Campus Didcot</street>
            <townOrCity>Didcot</townOrCity>
            <stateOrProvince>Oxfordshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>OX11 0DE</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-8091-9057</authorORCID>
            <firstName>Maria</firstName>
            <lastName>Harkiolaki</lastName>
            <organization type="academic">Diamond Light Source</organization>
            <street>Harwell Science &amp; Innovation Campus Didcot</street>
            <townOrCity>Didcot</townOrCity>
            <stateOrProvince>Oxfordshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>OX11 0DE</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-9877-0457">Kounatidis I</author>
            <author>Stanifer ML</author>
            <author>Phillips MA</author>
            <author authorORCID="0000-0002-4822-165X">Paul-Gilloteaux P</author>
            <author>Heiligenstein X</author>
            <author>Wang H</author>
            <author authorORCID="0000-0001-8779-8673">Okolo CA</author>
            <author authorORCID="0000-0001-7125-4137">Fish TM</author>
            <author>Spink MC</author>
            <author>Stuart DI</author>
            <author authorORCID="0000-0002-5385-3053">Davis I</author>
            <author>Boulant S</author>
            <author authorORCID="0000-0001-9698-0389">Grimes JM</author>
            <author>Dobbie IM</author>
            <author>Harkiolaki M</author>
        </authorsList>
        <datasetSize units="GB">2.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-10413</entryDOI>
        <experimentType>CLXM</experimentType>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-9877-0457" order="1">Kounatidis I</author>
                    <author order="2">Stanifer ML</author>
                    <author order="3">Phillips MA</author>
                    <author authorORCID="0000-0002-4822-165X" order="4">Paul-Gilloteaux P</author>
                    <author order="5">Heiligenstein X</author>
                    <author order="6">Wang H</author>
                    <author authorORCID="0000-0001-8779-8673" order="7">Okolo CA</author>
                    <author authorORCID="0000-0001-7125-4137" order="8">Fish TM</author>
                    <author order="9">Spink MC</author>
                    <author order="10">Stuart DI</author>
                    <author authorORCID="0000-0002-5385-3053" order="11">Davis I</author>
                    <author order="12">Boulant S</author>
                    <author authorORCID="0000-0001-9698-0389" order="13">Grimes JM</author>
                    <author order="14">Dobbie IM</author>
                    <author order="15">Harkiolaki M</author>
                    <title>3D Correlative Cryo-Structured Illumination Fluorescence and Soft X-ray Microscopy Elucidates Reovirus Intracellular Release Pathway</title>
                    <journal>Cell</journal>
                    <journalAbbreviation>Cell</journalAbbreviation>
                    <country></country>
                    <issue>2</issue>
                    <volume>182</volume>
                    <firstPage>515</firstPage>
                    <lastPage>530.e17</lastPage>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.cell.2020.05.051</externalReferences>
                    <externalReferences type="pubmed">32610083</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
        <relatedBioStudiesEntries>
            <bioStudiesEntry>S-BIAD17</bioStudiesEntry>
            <bioStudiesEntry>S-BIAD18</bioStudiesEntry>
            <bioStudiesEntry>S-BIAD19</bioStudiesEntry>
            <bioStudiesEntry>S-BIAD20</bioStudiesEntry>
        </relatedBioStudiesEntries>
    </crossReferences>
    <imageSet>
        <name>Tomogram of reovirus mock-infected U2OS cells (Area 2)</name>
        <directory>/data</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>946</imageWidth>
            <pixelWidth>160.0</pixelWidth>
            <imageHeight>946</imageHeight>
            <pixelHeight>160.0</pixelHeight>
        </dimensions>
        <details>Tomogram of reovirus mock-infected U2OS cells (Area2) 
EMPIAR entry 10413: U2OS_Reo_MockInfected_Area2_Reconstruction (S-BIAD17)


Note:
Associated with EMPIAR entry 10412 (adjacent/overlapping FOVs) 
 
Sample characteristics:                  
Substrate = Quantifoil F1 2/2
Fiducials = Au 250nm nanospheres

Data collection:                                 
Data collected at beamline B24 at Diamond Light source
Data collected 18th Feb 2019
Allocation award ID MX21046

Tilt series:
-65deg to 65deg
0.5deg step
Total frames 261
0.5sec exposure

Microscope make:                            
Zeiss UltraXRM-S220C

Data collection software:                
XRM Controller
 
Microscope setup:                          
 Energy: 500eV
Magnification = x812.5
FOV = 16microns
pixel size = 16x16nm
Zoneplate = 40nm
 
Data processing:                               
 Type = Automated
Software = Batchruntomo
Alignment protocol = SIRT</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
