<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10444" schemaVersion="0.65" public="true">
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        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2020-06-10</depositionDate>
            <releaseDate>2020-07-30</releaseDate>
            <updateDate>2020-07-30</updateDate>
        </keyDates>
        <title>Cryo-EM structures of calcium homeostasis modulator (CALHM) channels</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-1813-7008</authorORCID>
            <firstName>Osamu</firstName>
            <lastName>Nureki</lastName>
            <organization type="academic">Department of Biological Sciences, Graduate School of Science, The University of Tokyo</organization>
            <street>7-3-1 Hongo</street>
            <townOrCity>Bunkyo-ku</townOrCity>
            <stateOrProvince>Tokyo</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>113-0033</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-1813-7008</authorORCID>
            <firstName>Osamu</firstName>
            <lastName>Nureki</lastName>
            <organization type="academic">Department of Biological Sciences, Graduate School of Science, The University of Tokyo</organization>
            <street>7-3-1 Hongo</street>
            <townOrCity>Bunkyo-ku</townOrCity>
            <stateOrProvince>Tokyo</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>113-0033</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Demura K</author>
            <author authorORCID="0000-0002-6186-6647">Kusakizako T</author>
            <author>Shihoya W</author>
            <author>Hiraizumi M</author>
            <author>Shimada H</author>
            <author authorORCID="0000-0002-5442-7582">Yamashita K</author>
            <author>Nishizawa T</author>
            <author authorORCID="0000-0003-1813-7008">Nureki O</author>
        </authorsList>
        <datasetSize units="TB">6.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-10444</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-0919</emdbEntry>
            <emdbEntry>EMD-0920</emdbEntry>
            <emdbEntry>EMD-0921</emdbEntry>
            <emdbEntry>EMD-0922</emdbEntry>
            <emdbEntry>EMD-0923</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Demura K</author>
                    <author authorORCID="0000-0002-6186-6647" order="2">Kusakizako T</author>
                    <author order="3">Shihoya W</author>
                    <author order="4">Hiraizumi M</author>
                    <author order="5">Nomura K</author>
                    <author order="6">Shimada H</author>
                    <author authorORCID="0000-0002-5442-7582" order="7">Yamashita K</author>
                    <author order="8">Nishizawa T</author>
                    <author order="9">Taruno A</author>
                    <author authorORCID="0000-0003-1813-7008" order="10">Nureki O</author>
                    <title>Cryo-EM structures of calcium homeostasis modulator channels in diverse oligomeric assemblies</title>
                    <journal>Science Advances</journal>
                    <journalAbbreviation>Sci Adv</journalAbbreviation>
                    <country></country>
                    <issue>29</issue>
                    <volume>6</volume>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/sciadv.aba8105</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned movies for OlCALHM1</name>
        <directory>/data/Movies/Dataset0</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3075</numImagesOrTiltSeries>
        <framesPerImage>54</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>54</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>Gain reference is provided, which need to be flipped ('Flip upside down (1)' in RELION).</details>
        <segmentationList/>
        <micrographsFilePattern>data/Movies/Dataset0/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/Particles/dataset0-all.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/Particles/Dataset0</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned movies for HsCALHM2</name>
        <directory>/data/Movies/Dataset1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2110</numImagesOrTiltSeries>
        <framesPerImage>60</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>60</frameRangeMax>
        </frameRange>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.8346</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.8346</pixelHeight>
        </dimensions>
        <details>Unaligned, gain corrected movies from Falcon 3 in the counting mode. The MRC files from EPU were converted to the TIFF format by mrc2tif in IMOD. During this process, the pixel size in the image header became 1.0. Note that we started processing with the nominal pixel size of 0.861 Å and finally changed the value in PostProcess so that the pixels had the calibrated size of 0.8346 Å.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Movies/Dataset1/*.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern>data/Particles/dataset1-all.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/Particles/Dataset1</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned movies for CeCLHM-1</name>
        <directory>/data/Movies/Dataset2</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2906</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.8346</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.8346</pixelHeight>
        </dimensions>
        <details>Unaligned, gain corrected movies from Falcon 3 in the counting mode. The MRC files from EPU were converted to the TIFF format by mrc2tif in IMOD. During this process, the pixel size in the image header became 1.0. Note that we started processing with the nominal pixel size of 0.861 Å and finally changed the value in PostProcess so that the pixels had the calibrated size of 0.8346 Å.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Movies/Dataset2/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/Particles/dataset2-all.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/Particles/Dataset2</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned movies for OlCALHM1-HsCALHM2 chimera</name>
        <directory>/data/Movies/Dataset3</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2808</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>Gain reference is provided, which need to be flipped ('Flip upside down (1)' in RELION).</details>
        <segmentationList/>
        <micrographsFilePattern>data/Movies/Dataset3/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/Particles/dataset3-[12].star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/Particles/Dataset3_[12]</pickedParticlesDirectory>
    </imageSet>
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