<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10765" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-07-07</depositionDate>
            <releaseDate>2021-09-17</releaseDate>
            <updateDate>2021-10-19</updateDate>
        </keyDates>
        <title>Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with progressive supranuclear palsy</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-1579-7561</authorORCID>
            <firstName>Yang</firstName>
            <lastName>Shi</lastName>
            <organization type="academic">MRC-LMB</organization>
            <street>Francis Crick Avenue, Cambridge Biomedical Campus</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <firstName>Sjors</firstName>
            <middleName>HW</middleName>
            <lastName>Scheres</lastName>
            <organization type="academic">MRC-LMB</organization>
            <street>Francis Crick Avenue, Cambridge Biomedical Campus</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <firstName>Michel</firstName>
            <lastName>Goedert</lastName>
            <organization type="academic">MRC-LMB</organization>
            <street>Francis Crick Avenue, Cambridge Biomedical Campus</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-1579-7561">Shi Y</author>
            <author>Zhang W</author>
            <author>Yang Y</author>
            <author>Murzin AG</author>
            <author>Falcon B</author>
            <author authorORCID="0000-0002-4480-5439">Kotecha A</author>
            <author>van Beers M</author>
            <author>Tarutani A</author>
            <author authorORCID="0000-0001-9125-7001">Kametani F</author>
            <author authorORCID="0000-0002-1899-7676">Garringer HJ</author>
            <author>Vidal R</author>
            <author authorORCID="0000-0001-6010-7449">Hallinan GI</author>
            <author>Lashley T</author>
            <author>Saito Y</author>
            <author>Murayama S</author>
            <author>Yoshida M</author>
            <author authorORCID="0000-0002-8490-3877">Tanaka H</author>
            <author>Kakita A</author>
            <author authorORCID="0000-0001-8828-8085">Ikeuchi T</author>
            <author authorORCID="0000-0003-2208-7728">Robinson AC</author>
            <author>Mann DMA</author>
            <author authorORCID="0000-0003-3841-5511">Kovacs GG</author>
            <author>Revesz T</author>
            <author authorORCID="0000-0002-1842-8019">Ghetti B</author>
            <author authorORCID="0000-0001-7415-8159">Hasegawa M</author>
            <author authorORCID="0000-0002-5214-7886">Goedert M</author>
            <author authorORCID="0000-0002-0462-6540">Scheres SHW</author>
        </authorsList>
        <datasetSize>967.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-10765</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13218</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-1579-7561" order="1">Shi Y</author>
                    <author order="2">Zhang W</author>
                    <author order="3">Yang Y</author>
                    <author order="4">Murzin AG</author>
                    <author order="5">Falcon B</author>
                    <author authorORCID="0000-0002-4480-5439" order="6">Kotecha A</author>
                    <author order="7">van Beers M</author>
                    <author order="8">Tarutani A</author>
                    <author authorORCID="0000-0001-9125-7001" order="9">Kametani F</author>
                    <author authorORCID="0000-0002-1899-7676" order="10">Garringer HJ</author>
                    <author order="11">Vidal R</author>
                    <author authorORCID="0000-0001-6010-7449" order="12">Hallinan GI</author>
                    <author order="13">Lashley T</author>
                    <author order="14">Saito Y</author>
                    <author order="15">Murayama S</author>
                    <author order="16">Yoshida M</author>
                    <author authorORCID="0000-0002-8490-3877" order="17">Tanaka H</author>
                    <author order="18">Kakita A</author>
                    <author authorORCID="0000-0001-8828-8085" order="19">Ikeuchi T</author>
                    <author authorORCID="0000-0003-2208-7728" order="20">Robinson AC</author>
                    <author order="21">Mann DMA</author>
                    <author authorORCID="0000-0003-3841-5511" order="22">Kovacs GG</author>
                    <author order="23">Revesz T</author>
                    <author authorORCID="0000-0002-1842-8019" order="24">Ghetti B</author>
                    <author authorORCID="0000-0001-7415-8159" order="25">Hasegawa M</author>
                    <author authorORCID="0000-0002-5214-7886" order="26">Goedert M</author>
                    <author authorORCID="0000-0002-0462-6540" order="27">Scheres SHW</author>
                    <title>Structure-based classification of tauopathies</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>7880</issue>
                    <volume>598</volume>
                    <firstPage>359</firstPage>
                    <lastPage>363</lastPage>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41586-021-03911-7</externalReferences>
                    <externalReferences type="pubmed">34588692</externalReferences>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0003-1579-7561" order="1">Shi Y</author>
                    <author order="2">Zhang W</author>
                    <author order="3">Yang Y</author>
                    <author order="4">Murzin A</author>
                    <author order="5">Falcon B</author>
                    <author order="6">Kotecha A</author>
                    <author order="7">van Beers M</author>
                    <author order="8">Tarutani A</author>
                    <author order="9">Kametani F</author>
                    <author order="10">Garringer HJ</author>
                    <author order="11">Vidal R</author>
                    <author order="12">Hallinan GI</author>
                    <author order="13">Lashley T</author>
                    <author order="14">Saito Y</author>
                    <author order="15">Murayama S</author>
                    <author order="16">Yoshida M</author>
                    <author order="17">Tanaka H</author>
                    <author order="18">Kakita A</author>
                    <author order="19">Ikeuchi T</author>
                    <author order="20">Robinson AC</author>
                    <author order="21">Mann DM</author>
                    <author order="22">Kovacs GG</author>
                    <author order="23">Revesz T</author>
                    <author order="24">Ghetti B</author>
                    <author order="25">Hasegawa M</author>
                    <author order="26">Goedert M</author>
                    <author order="27">Scheres SH</author>
                    <title>Structure-based Classification of Tauopathies</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2021</year>
                    <externalReferences type="doi">10.1101/2021.05.28.446130</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame movies</name>
        <directory>/data/PSP/Movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>6601</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.15</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.15</pixelHeight>
        </dimensions>
        <details>The files were written as gain-unnormalised integer MRC files by EPU and then converted to TIFF files by mrc2tif in the IMOD suite. During this process, the pixel size in the header was lost. The real pixel size is 1.15 A/px. The dose rate is 1.0155 e/A2/frame. Please use Movies/gain.mrc as a gain reference without any rotation or flipping.

data/PSP/Start_end_coordinates contains start-end coordinates of the manually picked filaments.

data/PSP/Data.star contains STAR file with the metadata of the final refined segments.</details>
        <segmentationList/>
        <micrographsFilePattern>data/PSP/Movies/Images-Disc1/GridSquare_*/Data/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/PSP/Start_end_coordinates/Movies/Images-Disc1/GridSquare_*/Data/*_manualpick.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/PSP/Start_end_coordinates</pickedParticlesDirectory>
    </imageSet>
</entry>
