<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10768" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-07-17</depositionDate>
            <releaseDate>2021-09-17</releaseDate>
            <updateDate>2021-10-19</updateDate>
        </keyDates>
        <title>Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the nucleus accumbens of an individual with argyrophilic grain disease</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-1579-7561</authorORCID>
            <firstName>Yang</firstName>
            <lastName>Shi</lastName>
            <organization type="academic">MRC-LMB</organization>
            <street>Francis Crick Avenue, Cambridge Biomedical Campus</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <firstName>Sjors</firstName>
            <middleName>HW</middleName>
            <lastName>Scheres</lastName>
            <organization type="academic">MRC-LMB</organization>
            <street>Francis Crick Avenue, Cambridge Biomedical Campus</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <firstName>Michel</firstName>
            <lastName>Goedert</lastName>
            <organization type="academic">MRC-LMB</organization>
            <street>Francis Crick Avenue, Cambridge Biomedical Campus</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-1579-7561">Shi Y</author>
            <author>Zhang W</author>
            <author>Yang Y</author>
            <author>Murzin AG</author>
            <author>Falcon B</author>
            <author authorORCID="0000-0002-4480-5439">Kotecha A</author>
            <author>van Beers M</author>
            <author>Tarutani A</author>
            <author authorORCID="0000-0001-9125-7001">Kametani F</author>
            <author authorORCID="0000-0002-1899-7676">Garringer HJ</author>
            <author>Vidal R</author>
            <author authorORCID="0000-0001-6010-7449">Hallinan GI</author>
            <author>Lashley T</author>
            <author>Saito Y</author>
            <author>Murayama S</author>
            <author>Yoshida M</author>
            <author authorORCID="0000-0002-8490-3877">Tanaka H</author>
            <author>Kakita A</author>
            <author authorORCID="0000-0001-8828-8085">Ikeuchi T</author>
            <author authorORCID="0000-0003-2208-7728">Robinson AC</author>
            <author>Mann DMA</author>
            <author authorORCID="0000-0003-3841-5511">Kovacs GG</author>
            <author>Revesz T</author>
            <author authorORCID="0000-0002-1842-8019">Ghetti B</author>
            <author authorORCID="0000-0001-7415-8159">Hasegawa M</author>
            <author authorORCID="0000-0002-5214-7886">Goedert M</author>
            <author authorORCID="0000-0002-0462-6540">Scheres SHW</author>
        </authorsList>
        <datasetSize units="TB">2.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-10768</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13226</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-1579-7561" order="1">Shi Y</author>
                    <author order="2">Zhang W</author>
                    <author order="3">Yang Y</author>
                    <author order="4">Murzin AG</author>
                    <author order="5">Falcon B</author>
                    <author authorORCID="0000-0002-4480-5439" order="6">Kotecha A</author>
                    <author order="7">van Beers M</author>
                    <author order="8">Tarutani A</author>
                    <author authorORCID="0000-0001-9125-7001" order="9">Kametani F</author>
                    <author authorORCID="0000-0002-1899-7676" order="10">Garringer HJ</author>
                    <author order="11">Vidal R</author>
                    <author authorORCID="0000-0001-6010-7449" order="12">Hallinan GI</author>
                    <author order="13">Lashley T</author>
                    <author order="14">Saito Y</author>
                    <author order="15">Murayama S</author>
                    <author order="16">Yoshida M</author>
                    <author authorORCID="0000-0002-8490-3877" order="17">Tanaka H</author>
                    <author order="18">Kakita A</author>
                    <author authorORCID="0000-0001-8828-8085" order="19">Ikeuchi T</author>
                    <author authorORCID="0000-0003-2208-7728" order="20">Robinson AC</author>
                    <author order="21">Mann DMA</author>
                    <author authorORCID="0000-0003-3841-5511" order="22">Kovacs GG</author>
                    <author order="23">Revesz T</author>
                    <author authorORCID="0000-0002-1842-8019" order="24">Ghetti B</author>
                    <author authorORCID="0000-0001-7415-8159" order="25">Hasegawa M</author>
                    <author authorORCID="0000-0002-5214-7886" order="26">Goedert M</author>
                    <author authorORCID="0000-0002-0462-6540" order="27">Scheres SHW</author>
                    <title>Structure-based classification of tauopathies</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>7880</issue>
                    <volume>598</volume>
                    <firstPage>359</firstPage>
                    <lastPage>363</lastPage>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41586-021-03911-7</externalReferences>
                    <externalReferences type="pubmed">34588692</externalReferences>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0003-1579-7561" order="1">Shi Y</author>
                    <author order="2">Zhang W</author>
                    <author order="3">Yang Y</author>
                    <author order="4">Murzin A</author>
                    <author order="5">Falcon B</author>
                    <author order="6">Kotecha A</author>
                    <author order="7">van Beers M</author>
                    <author order="8">Tarutani A</author>
                    <author order="9">Kametani F</author>
                    <author order="10">Garringer HJ</author>
                    <author order="11">Vidal R</author>
                    <author order="12">Hallinan GI</author>
                    <author order="13">Lashley T</author>
                    <author order="14">Saito Y</author>
                    <author order="15">Murayama S</author>
                    <author order="16">Yoshida M</author>
                    <author order="17">Tanaka H</author>
                    <author order="18">Kakita A</author>
                    <author order="19">Ikeuchi T</author>
                    <author order="20">Robinson AC</author>
                    <author order="21">Mann DM</author>
                    <author order="22">Kovacs GG</author>
                    <author order="23">Revesz T</author>
                    <author order="24">Ghetti B</author>
                    <author order="25">Hasegawa M</author>
                    <author order="26">Goedert M</author>
                    <author order="27">Scheres SH</author>
                    <title>Structure-based Classification of Tauopathies</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2021</year>
                    <externalReferences type="doi">10.1101/2021.05.28.446130</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame movies</name>
        <directory>/data/AGD/Movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>15227</numImagesOrTiltSeries>
        <framesPerImage>35</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.17</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.17</pixelHeight>
        </dimensions>
        <details>The files were written as gain-unnormalised TIF files by EPU. The dose rate is 0.89 e/A2/frame. Please use Movies/FoilHole_19945800_Data_19967971_19967973_20210320_192134_gain.tiff as a gain reference without any rotation or flipping.

data/AGD/start_end_coordinates contains start-end coordinates of the manually picked filaments.

data/AGD/data.star contains STAR files with the metadata of the final refined segments.</details>
        <segmentationList/>
        <micrographsFilePattern>data/AGD/Movies/M*/Images-Disc1/GridSquare*/Data/*fractions.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern>data/AGD/start_end_coordinates/M*/Images-Disc1/GridSquare*/Data/*manualpick.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/AGD/start_end_coordinates</pickedParticlesDirectory>
    </imageSet>
</entry>
