<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10822" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-09-28</depositionDate>
            <releaseDate>2021-10-25</releaseDate>
            <updateDate>2022-02-25</updateDate>
        </keyDates>
        <title>Cryo Electron Tomography of isolated S-layer patches from Ca.M.lanthanidiphila</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-7011-7234</authorORCID>
            <firstName>Laura</firstName>
            <lastName>van Niftrik</lastName>
            <organization type="academic">Microbial Cell Biology and Biochemistry, Dept. Microbiology, RIBES institute, Faculty of Science, Radboud University</organization>
            <street>Heyenaalseweg 135</street>
            <townOrCity>Nijmegen</townOrCity>
            <country>Netherlands</country>
            <postOrZipCode>6525 AJ</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-2257-6364</authorORCID>
            <firstName>Lavinia</firstName>
            <lastName>Gambelli</lastName>
            <organization type="academic">Living Systems Institute, University of Exeter</organization>
            <street>Stocker Road</street>
            <townOrCity>Exeter</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>EX4 4QD</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <authorORCID>0000-0003-0877-3676</authorORCID>
            <firstName>Rob</firstName>
            <lastName>Mesman</lastName>
            <organization type="academic">Microbial Cell Biology and Biochemistry, Dept. Microbiology, RIBES institute, Faculty of Science, Radboud University</organization>
            <street>Heyenaalseweg 135</street>
            <townOrCity>Nijmegen</townOrCity>
            <country>Netherlands</country>
            <postOrZipCode>6525 AJ</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <authorORCID>0000-0002-7011-7234</authorORCID>
            <firstName>Laura</firstName>
            <lastName>van Niftrik</lastName>
            <organization type="academic">Microbial Cell Biology and Biochemistry, Dept. Microbiology, RIBES institute, Faculty of Science, Radboud University</organization>
            <street>Heyenaalseweg 135</street>
            <townOrCity>Nijmegen</townOrCity>
            <country>Netherlands</country>
            <postOrZipCode>6525 AJ</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-2257-6364">Gambelli L</author>
            <author authorORCID="0000-0003-0877-3676">Mesman R</author>
            <author authorORCID="0000-0001-5418-2741">Versantvoort W</author>
            <author>Diebolder CA</author>
            <author>Engel A</author>
            <author>Evers W</author>
            <author>Jetten MSM</author>
            <author>Pabst M</author>
            <author authorORCID="0000-0002-3767-264X">Daum B</author>
            <author authorORCID="0000-0002-7011-7234">van Niftrik L</author>
        </authorsList>
        <datasetSize>46.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-10822</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13670</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-2257-6364" order="1">Gambelli L</author>
                    <author authorORCID="0000-0003-0877-3676" order="2">Mesman R</author>
                    <author authorORCID="0000-0001-5418-2741" order="3">Versantvoort W</author>
                    <author order="4">Diebolder CA</author>
                    <author order="5">Engel A</author>
                    <author order="6">Evers W</author>
                    <author order="7">Jetten MSM</author>
                    <author order="8">Pabst M</author>
                    <author authorORCID="0000-0002-3767-264X" order="9">Daum B</author>
                    <author authorORCID="0000-0002-7011-7234" order="10">van Niftrik L</author>
                    <title>The Polygonal Cell Shape and Surface Protein Layer of Anaerobic Methane-Oxidizing &lt;i&gt;Methylomirabilis&lt;/i&gt; &lt;i&gt;lanthanidiphila&lt;/i&gt; Bacteria</title>
                    <journal>Frontiers in microbiology</journal>
                    <journalAbbreviation>Front Microbiol</journalAbbreviation>
                    <country></country>
                    <volume>12</volume>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.3389/fmicb.2021.766527</externalReferences>
                    <externalReferences type="pubmed">34925275</externalReferences>
                    <details>Tomograms were reconstructed from aligned movie frames (10 frames per tilt angle, exposure dose 0.17154 e/A^2 per frame, total dose ~103 e/A^2 for the whole tilt-series) 
Details on the acquisition can be found in the .mdoc file, tilt-angles are documented in the .tlt file.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Reconstructed tomogram of isolated Ca. M.lanthanidiphila S-layer patches</name>
        <directory>/data/Mlanthanidiphila_Slayer31</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>672</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4092</imageWidth>
            <pixelWidth>2.62631</pixelWidth>
            <imageHeight>5760</imageHeight>
            <pixelHeight>2.62631</pixelHeight>
        </dimensions>
        <details>Aquisition parameters in the corresponding mdoc file. Tilt-angles for missing wedge compensation in the corresponding tlt file</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Reconstructed tomogram of isolated Ca. M.lanthanidiphila S-layer patches</name>
        <directory>/data/Mlanthanidiphila_Slayer32</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>382</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4092</imageWidth>
            <pixelWidth>2.62631</pixelWidth>
            <imageHeight>5760</imageHeight>
            <pixelHeight>2.62631</pixelHeight>
        </dimensions>
        <details>Aquisition parameters in the corresponding mdoc file. Tilt-angles for missing wedge compensation in the corresponding tlt file</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
