<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10968" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-02-25</depositionDate>
            <releaseDate>2022-03-11</releaseDate>
            <updateDate>2022-10-17</updateDate>
        </keyDates>
        <title>Cryo-EM reconstruction of TMEM106B fold I-d filaments from case 18 with multiple system atrophy</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-1848-1610</authorORCID>
            <firstName>Manuel</firstName>
            <lastName>Schweighauser</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Francis Crick Avenue</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-5214-7886</authorORCID>
            <firstName>Michel</firstName>
            <lastName>Goedert</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Francis Crick Avenue</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB1 0QH</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <authorORCID>0000-0002-0462-6540</authorORCID>
            <firstName>Sjors</firstName>
            <middleName>HW</middleName>
            <lastName>Scheres</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Francis Crick Avenue</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-1848-1610">Schweighauser M</author>
            <author authorORCID="0000-0001-7585-288X">Arseni D</author>
            <author authorORCID="0000-0003-0304-7026">Bacioglu M</author>
            <author authorORCID="0000-0002-0698-6996">Huang M</author>
            <author authorORCID="0000-0002-2152-1476">Lövestam S</author>
            <author authorORCID="0000-0003-1579-7561">Shi Y</author>
            <author authorORCID="0000-0003-2238-6437">Yang Y</author>
            <author authorORCID="0000-0002-3011-9956">Zhang W</author>
            <author authorORCID="0000-0002-4480-5439">Kotecha A</author>
            <author authorORCID="0000-0002-1899-7676">Garringer HJ</author>
            <author authorORCID="0000-0002-5803-3871">Vidal R</author>
            <author authorORCID="0000-0001-6010-7449">Hallinan GI</author>
            <author authorORCID="0000-0002-1648-7357">Newell KL</author>
            <author authorORCID="0000-0003-3835-9070">Tarutani A</author>
            <author authorORCID="0000-0001-9709-5242">Murayama S</author>
            <author>Miyazaki M</author>
            <author>Saito Y</author>
            <author authorORCID="0000-0002-8520-6184">Yoshida M</author>
            <author authorORCID="0000-0002-0142-4839">Hasegawa K</author>
            <author authorORCID="0000-0001-7389-0348">Lashley T</author>
            <author authorORCID="0000-0003-2501-0259">Revesz T</author>
            <author authorORCID="0000-0003-3841-5511">Kovacs GG</author>
            <author authorORCID="0000-0001-6278-6844">van Swieten J</author>
            <author>Takao M</author>
            <author authorORCID="0000-0001-7415-8159">Hasegawa M</author>
            <author authorORCID="0000-0002-1842-8019">Ghetti B</author>
            <author authorORCID="0000-0002-8544-7332">Spillantini MG</author>
            <author authorORCID="0000-0002-8176-2618">Ryskeldi-Falcon B</author>
            <author>Murzin AG</author>
            <author authorORCID="0000-0002-5214-7886">Goedert M</author>
            <author authorORCID="0000-0002-0462-6540">Scheres SHW</author>
        </authorsList>
        <datasetSize units="TB">1.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-10968</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-14176</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-1848-1610" order="1">Schweighauser M</author>
                    <author authorORCID="0000-0001-7585-288X" order="2">Arseni D</author>
                    <author authorORCID="0000-0003-0304-7026" order="3">Bacioglu M</author>
                    <author authorORCID="0000-0002-0698-6996" order="4">Huang M</author>
                    <author authorORCID="0000-0002-2152-1476" order="5">Lövestam S</author>
                    <author authorORCID="0000-0003-1579-7561" order="6">Shi Y</author>
                    <author authorORCID="0000-0003-2238-6437" order="7">Yang Y</author>
                    <author authorORCID="0000-0002-3011-9956" order="8">Zhang W</author>
                    <author authorORCID="0000-0002-4480-5439" order="9">Kotecha A</author>
                    <author authorORCID="0000-0002-1899-7676" order="10">Garringer HJ</author>
                    <author authorORCID="0000-0002-5803-3871" order="11">Vidal R</author>
                    <author authorORCID="0000-0001-6010-7449" order="12">Hallinan GI</author>
                    <author authorORCID="0000-0002-1648-7357" order="13">Newell KL</author>
                    <author authorORCID="0000-0003-3835-9070" order="14">Tarutani A</author>
                    <author authorORCID="0000-0001-9709-5242" order="15">Murayama S</author>
                    <author order="16">Miyazaki M</author>
                    <author order="17">Saito Y</author>
                    <author authorORCID="0000-0002-8520-6184" order="18">Yoshida M</author>
                    <author authorORCID="0000-0002-0142-4839" order="19">Hasegawa K</author>
                    <author authorORCID="0000-0001-7389-0348" order="20">Lashley T</author>
                    <author authorORCID="0000-0003-2501-0259" order="21">Revesz T</author>
                    <author authorORCID="0000-0003-3841-5511" order="22">Kovacs GG</author>
                    <author authorORCID="0000-0001-6278-6844" order="23">van Swieten J</author>
                    <author order="24">Takao M</author>
                    <author authorORCID="0000-0001-7415-8159" order="25">Hasegawa M</author>
                    <author authorORCID="0000-0002-1842-8019" order="26">Ghetti B</author>
                    <author authorORCID="0000-0002-8544-7332" order="27">Spillantini MG</author>
                    <author authorORCID="0000-0002-8176-2618" order="28">Ryskeldi-Falcon B</author>
                    <author order="29">Murzin AG</author>
                    <author authorORCID="0000-0002-5214-7886" order="30">Goedert M</author>
                    <author authorORCID="0000-0002-0462-6540" order="31">Scheres SHW</author>
                    <title>Age-dependent formation of TMEM106B amyloid filaments in human brains</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>7909</issue>
                    <volume>605</volume>
                    <firstPage>310</firstPage>
                    <lastPage>314</lastPage>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41586-022-04650-z</externalReferences>
                    <externalReferences type="pubmed">35344985</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame movies</name>
        <directory>/data/TMEM106B_Case18/Movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>5697</numImagesOrTiltSeries>
        <framesPerImage>54</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.15</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.15</pixelHeight>
        </dimensions>
        <details>Movies were recorded automatically using EPU on a K2 camera in counting mode on a Titan Krios microscope operated at 300 kV (Cs=2.7) equipped with an energy filter using a slit width of 20 eV. The files were written as gain-unnormalised integer MRC files by EPU and then converted to TIFF files by mrc2tif in the IMOD suite. During this process, the pixel size in the header was lost. The real pixel size is 1.15 A/px. The dose rates are 0.91 and 0.89 e/A2/frame for Dataset1 and Dataset2, respectively. The gain references are provided for each dataset and should be used without any rotation or flipping.

data/TMEM106B_Case18/start_end_coordinates contains start-end coordinates of the manually picked filaments from datasets 1 and 2.

data/TMEM106B_Case18/run_data_TMEM10B_Case18_job534.star is the RELION-3.1 STAR file containing the metadata of the final refined segments.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
