<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11046" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-05-12</depositionDate>
            <releaseDate>2022-05-27</releaseDate>
            <updateDate>2022-05-27</updateDate>
        </keyDates>
        <title>Human Xkr8-Basigin complex bound to Fab fragment</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-2232-3754</authorORCID>
            <firstName>Takaharu</firstName>
            <lastName>Sakuragi</lastName>
            <organization type="academic">Osaka University</organization>
            <street>3-1 Yamadaoka</street>
            <townOrCity>Suita</townOrCity>
            <stateOrProvince>Osaka</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>565-0871</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0001-9758-8426</authorORCID>
            <firstName>Shigekazu</firstName>
            <lastName>Nagata</lastName>
            <organization type="academic">Osaka University</organization>
            <street>3-1 Yamadaoka</street>
            <townOrCity>Suita</townOrCity>
            <stateOrProvince>Osaka</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>565-0871</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-2232-3754">Sakuragi T</author>
            <author authorORCID="0000-0003-2542-4881">Tsutsumi A</author>
            <author authorORCID="0000-0001-7656-8194">Kikkawa M</author>
            <author authorORCID="0000-0001-9758-8426">Nagata S</author>
        </authorsList>
        <datasetSize>451.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-11046</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-30636</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-2232-3754" order="1">Sakuragi T</author>
                    <author order="2">Kanai R</author>
                    <author authorORCID="0000-0003-2542-4881" order="3">Tsutsumi A</author>
                    <author order="4">Narita H</author>
                    <author order="5">Onishi E</author>
                    <author order="6">Nishino K</author>
                    <author order="7">Miyazaki T</author>
                    <author order="8">Baba T</author>
                    <author authorORCID="0000-0003-3228-6368" order="9">Kosako H</author>
                    <author authorORCID="0000-0002-1700-7861" order="10">Nakagawa A</author>
                    <author authorORCID="0000-0001-7656-8194" order="11">Kikkawa M</author>
                    <author authorORCID="0000-0001-9640-0778" order="12">Toyoshima C</author>
                    <author authorORCID="0000-0001-9758-8426" order="13">Nagata S</author>
                    <title>The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes</title>
                    <journal>Nature structural &amp; molecular biology</journal>
                    <journalAbbreviation>Nat Struct Mol Biol</journalAbbreviation>
                    <country></country>
                    <issue>10</issue>
                    <volume>28</volume>
                    <firstPage>825</firstPage>
                    <lastPage>834</lastPage>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41594-021-00665-8</externalReferences>
                    <externalReferences type="pubmed">34625749</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned K3 movies</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1998</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>0</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- Cs 2.7 mm
- 300 kV
- 1 e/A2/frame

Please use CountCDSRef_134-1_0000_May13_12.33.01.mrc as the gain reference without any rotation and flipping.

Four digits numbers in the movie file names (0000 to 0008) represent the direction of beam-image shifts. We defined nine optics groups in RELION to refine the beam tilt for each group.

final-particles-job094.star.bz2 contains the list (coordinates) of particles used for the final reconstruction deposited in EMDB.</details>
        <segmentationList/>
        <micrographsFilePattern>data/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/final-particles-job094.star.bz2</pickedParticlesFilePattern>
        <pickedParticlesDirectory>***_N/A_***</pickedParticlesDirectory>
    </imageSet>
</entry>
