<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11057" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-05-25</depositionDate>
            <releaseDate>2022-06-07</releaseDate>
            <updateDate>2022-06-07</updateDate>
        </keyDates>
        <title>Cryo-EM structure of the gastric proton pump complexed with revaprazan</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-2681-5921</authorORCID>
            <firstName>Kazuhiro</firstName>
            <lastName>Abe</lastName>
            <organization type="academic">Cellular and Structural Physiology Institute, Nagoya University</organization>
            <street>1, Furo-cho, Chikusa-ku</street>
            <townOrCity>Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>464-8601</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0003-2681-5921</authorORCID>
            <firstName>Kazuhiro</firstName>
            <lastName>Abe</lastName>
            <organization type="academic">Cellular and Structural Physiology Institute, Nagoya University</organization>
            <street>1, Furo-cho, Chikusa-ku</street>
            <townOrCity>Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>464-8601</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-2681-5921">Abe K</author>
            <author>Tanaka S</author>
            <author>Morita M</author>
            <author>Yamagishi T</author>
        </authorsList>
        <datasetSize units="TB">2.1</datasetSize>
        <entryDOI>10.6019/EMPIAR-11057</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-32299</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Tanaka S</author>
                    <author order="2">Morita M</author>
                    <author order="3">Yamagishi T</author>
                    <author order="4">Madapally HV</author>
                    <author order="5">Hayashida K</author>
                    <author order="6">Khandelia H</author>
                    <author order="7">Gerle C</author>
                    <author order="8">Shigematsu H</author>
                    <author order="9">Oshima A</author>
                    <author authorORCID="0000-0003-2681-5921" order="10">Abe K</author>
                    <title>Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump</title>
                    <journal>Journal of medicinal chemistry</journal>
                    <journalAbbreviation>J Med Chem</journalAbbreviation>
                    <country></country>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1021/acs.jmedchem.2c00338</externalReferences>
                    <externalReferences type="pubmed">35604136</externalReferences>
                    <details>This deposition contains raw movies for the gastric proton pump complexed with revaprazan. Two datasets (Movie 5 and 7) were merged to yield the published map.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>K3 movies for the gastric proton pump complexed with revaprazan - Movies_5</name>
        <directory>/data/7W4A_EDM32299/Movies_5</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>8431</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>50</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.752</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.752</pixelHeight>
        </dimensions>
        <details>HT: 300 kV
Cs: 2.7 mm
Flux: 1e/Å2/frame

Please use CountCDSRef_2021-10-03_05.10.16_210922_2_5_230-1_0000.mrc as a gain reference without rotation and flipping.
The four digits at the end of the file names (0000 to 0024) represent beam shift directions.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>K3 movies for the gastric proton pump complexed with revaprazan - Movies_7</name>
        <directory>/data/7W4A_EDM32299/Movies_7</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1525</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>50</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.752</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.752</pixelHeight>
        </dimensions>
        <details>HT: 300 kV
Cs: 2.7 mm
Flux: 1e/Å2/frame

Please use CountCDSRef_2021-10-02_08.42.47_10716A_3_133-3_0000.mrc as a gain reference without rotation and flipping.
The four digits at the end of the file names (0000 to 0024) represent beam shift directions.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
