<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11140" public="true">
    <admin>
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        <keyDates>
            <depositionDate>2022-06-28</depositionDate>
            <releaseDate>2022-11-11</releaseDate>
            <updateDate>2022-11-11</updateDate>
        </keyDates>
        <title>Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the cingulate cortex of an individual with Parkinson's disease dementia -synuclein filaments</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-2238-6437</authorORCID>
            <firstName>Yang</firstName>
            <lastName>Yang</lastName>
            <organization type="academic">MRC-LMB</organization>
            <street>Francis Crick Avenue, Cambridge Biomedical Campus</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-0462-6540</authorORCID>
            <firstName>Sjors</firstName>
            <middleName>HW</middleName>
            <lastName>Scheres</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Francis Crick Avenue</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <authorORCID>0000-0002-5214-7886</authorORCID>
            <firstName>Michel</firstName>
            <lastName>Goedert</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Francis Crick Avenue</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-2238-6437">Yang Y</author>
            <author authorORCID="0000-0003-1579-7561">Shi Y</author>
            <author authorORCID="0000-0002-1848-1610">Schweighauser M</author>
            <author>Zhang X</author>
            <author authorORCID="0000-0002-4480-5439">Kotecha A</author>
            <author>Murzin AG</author>
            <author authorORCID="0000-0002-1899-7676">Garringer HJ</author>
            <author>Cullinane PW</author>
            <author>Saito Y</author>
            <author authorORCID="0000-0002-5549-2212">Foroud T</author>
            <author authorORCID="0000-0001-6195-6995">Warner TT</author>
            <author>Hasegawa K</author>
            <author>Vidal R</author>
            <author>Murayama S</author>
            <author>Revesz T</author>
            <author authorORCID="0000-0002-1842-8019">Ghetti B</author>
            <author authorORCID="0000-0001-7415-8159">Hasegawa M</author>
            <author authorORCID="0000-0001-7389-0348">Lashley T</author>
            <author authorORCID="0000-0002-0462-6540">Scheres SHW</author>
            <author authorORCID="0000-0002-5214-7886">Goedert M</author>
        </authorsList>
        <datasetSize units="TB">1.2</datasetSize>
        <entryDOI>10.6019/EMPIAR-11140</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-15285</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-2238-6437" order="1">Yang Y</author>
                    <author authorORCID="0000-0003-1579-7561" order="2">Shi Y</author>
                    <author authorORCID="0000-0002-1848-1610" order="3">Schweighauser M</author>
                    <author order="4">Zhang X</author>
                    <author authorORCID="0000-0002-4480-5439" order="5">Kotecha A</author>
                    <author order="6">Murzin AG</author>
                    <author authorORCID="0000-0002-1899-7676" order="7">Garringer HJ</author>
                    <author order="8">Cullinane PW</author>
                    <author order="9">Saito Y</author>
                    <author authorORCID="0000-0002-5549-2212" order="10">Foroud T</author>
                    <author authorORCID="0000-0001-6195-6995" order="11">Warner TT</author>
                    <author order="12">Hasegawa K</author>
                    <author order="13">Vidal R</author>
                    <author order="14">Murayama S</author>
                    <author order="15">Revesz T</author>
                    <author authorORCID="0000-0002-1842-8019" order="16">Ghetti B</author>
                    <author authorORCID="0000-0001-7415-8159" order="17">Hasegawa M</author>
                    <author authorORCID="0000-0001-7389-0348" order="18">Lashley T</author>
                    <author authorORCID="0000-0002-0462-6540" order="19">Scheres SHW</author>
                    <author authorORCID="0000-0002-5214-7886" order="20">Goedert M</author>
                    <title>Structures of α-synuclein filaments from human brains with Lewy pathology</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>7933</issue>
                    <volume>610</volume>
                    <firstPage>791</firstPage>
                    <lastPage>795</lastPage>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41586-022-05319-3</externalReferences>
                    <externalReferences type="pubmed">36108674</externalReferences>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0003-2238-6437" order="1">Yang Y</author>
                    <author order="2">Shi Y</author>
                    <author order="3">Schweighauser M</author>
                    <author order="4">Zhang X</author>
                    <author order="5">Kotecha A</author>
                    <author order="6">Murzin AG</author>
                    <author order="7">Garringer HJ</author>
                    <author order="8">Cullinane PW</author>
                    <author order="9">Saito Y</author>
                    <author order="10">Foroud T</author>
                    <author order="11">Warner TT</author>
                    <author order="12">Hasegawa K</author>
                    <author order="13">Vidal R</author>
                    <author order="14">Murayama S</author>
                    <author order="15">Revesz T</author>
                    <author authorORCID="0000-0002-1842-8019" order="16">Ghetti B</author>
                    <author order="17">Hasegawa M</author>
                    <author order="18">Lashley T</author>
                    <author authorORCID="0000-0002-0462-6540" order="19">Scheres SHW</author>
                    <author authorORCID="0000-0002-5214-7886" order="20">Goedert M</author>
                    <title>Cryo-EM structures of α-synuclein filaments from Parkinson’s disease and dementia with Lewy bodies</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2022</year>
                    <externalReferences type="doi">10.1101/2022.07.12.499706</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Cryo-EM reconstruction of alpha-synuclein filaments from Parkinson's disease dementia</name>
        <directory>/data/Micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>10874</numImagesOrTiltSeries>
        <framesPerImage>42</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.727</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.727</pixelHeight>
        </dimensions>
        <details>The files were written as eer files by EPU and then converted to TIFF files by relion_convert_to_tiff. During this process, the pixel size in the header was lost. The real pixel size is 0.727 A/px. The dose rate is 1 e/A2/frame for Dataset1 and Dataset2. Please use gain-reference accordingly without any rotation or flipping.
picking contains start-end coordinates of the manually picked filaments of Dataset1 and Dataset2, respectively.
Refine070_run_data.star contains STAR file(s) with the metadata of the final refined segments.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Micrographs/Dataset*</micrographsFilePattern>
        <pickedParticlesFilePattern>data/picking/Dataset*</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data</pickedParticlesDirectory>
    </imageSet>
</entry>
