<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11248" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-10-03</depositionDate>
            <releaseDate>2022-10-17</releaseDate>
            <updateDate>2022-10-17</updateDate>
        </keyDates>
        <title>Cryo-EM structure of non gastric H,K-ATPase alpha2 mutants</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-2681-5921</authorORCID>
            <firstName>Kazuhiro</firstName>
            <lastName>Abe</lastName>
            <organization type="academic">Cellular and Structural Physiology Institute, Nagoya University</organization>
            <street>1, Furo-cho, Chikusa-ku</street>
            <townOrCity>Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>464-8601</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0003-2681-5921</authorORCID>
            <firstName>Kazuhiro</firstName>
            <lastName>Abe</lastName>
            <organization type="academic">Cellular and Structural Physiology Institute, Nagoya University</organization>
            <street>1, Furo-cho, Chikusa-ku</street>
            <townOrCity>Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>464-8601</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-2681-5921">Abe K</author>
            <author>Nakanishi H</author>
        </authorsList>
        <datasetSize units="TB">3.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-11248</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-32954</emdbEntry>
            <emdbEntry>EMD-32955</emdbEntry>
            <emdbEntry>EMD-32956</emdbEntry>
            <emdbEntry>EMD-32957</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Young VC</author>
                    <author order="2">Nakanishi H</author>
                    <author order="3">Meyer DJ</author>
                    <author order="4">Nishizawa T</author>
                    <author order="5">Oshima A</author>
                    <author order="6">Artigas P</author>
                    <author order="7">Abe K</author>
                    <title>Structure and function of H+/K+ pump mutants reveal Na+/K+ pump mechanism</title>
                    <journal>Nature Communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <volume>13</volume>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-022-32793-0</externalReferences>
                    <externalReferences type="pubmed">36085139</externalReferences>
                    <details>This entry contains four CryoEM datasets reported in the paper.

- ngHKA K794A (K+)E2-Pi state, PDB 7X21, EMD-32954
- ngHKA K794S (2K+)E2-Pi state, PDB 7X22, EMD-32955
- ngHKA SPWC 3Na+ꞏE1-ATP state, PDB 7X23, EMD-32956
- ngHKA SPWC (2K+)E2-Pi state, PDB 7X24, EMD-32957</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>K3 movies for ngHKA K794A (K+)E2-Pi state, PDB 7X21, EMD-32954</name>
        <directory>/data/7x21/</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3106</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>2</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>- 300 kV
- Cs 2.7 mm
- 0.83 Å/pix
- 53 e-/Å2 in 50 frames

Please exclude the first frame from processing because it is corrupted due to a bug in the CDS mode.
Please use 'CountRef_abe3-1_5-015_0000_Sep08_13.42.21.mrc' as a gain reference without rotation or flipping.
Four digits (0000 to 0008) in the file name represent the beam shift directions.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>K3 movies for ngHKA K794S (2K+)E2-Pi state, PDB 7X22, EMD-32955</name>
        <directory>/data/7x22/</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3141</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>2</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>- 300 kV
- Cs 2.7 mm
- 0.83 Å/pix
- 53 e-/Å2 in 50 frames

Please exclude the first frame from processing because it is corrupted due to a bug in the CDS mode.
Please use 'CountRef_abe2-1_5-A-001_0000_Feb21_16.39.37.mrc' for files under 'Movies_2-1' and  'CountRef_abe2-1_3-A-001_0000_Feb21_23.51.48.mrc' for files under 'Movies_2-3' as a gain reference without rotation or flipping.
Four digits (0000 to 0008) in the file name represent the beam shift directions.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>K3 movies for ngHKA SPWC 3Na+ꞏE1-ATP state, PDB 7X23, EMD-32956</name>
        <directory>/data/7x23/</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3627</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>2</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>- 300 kV
- Cs 2.7 mm
- 0.83 Å/pix
- 53 e-/Å2 in 50 frames

Please exclude the first frame from processing because it is corrupted due to a bug in the CDS mode.
Please use 'CountCDSRef_abe1-1_21-A-001-1_0000_Aug02_14.03.28.mrc' as a gain reference without rotation or flipping.
Four digits (0000 to 0008) in the file name represent the beam shift directions.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>K3 movies for ngHKA SPWC (2K+)E2-Pi state, PDB 7X24, EMD-32957</name>
        <directory>/data/7x24/</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>4150</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>2</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>- 300 kV
- Cs 2.7 mm
- 0.83 Å/pix
- 53 e-/Å2 in 50 frames

Please exclude the first frame from processing because it is corrupted due to a bug in the CDS mode.
Please use 'CountCDSRef_abe1-1_11_0000_Jun14_15.38.45.mrc' as a gain reference without rotation or flipping.
Four digits (0000 to 0008) in the file name represent the beam shift directions.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
