<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11319" schemaVersion="0.63" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-11-14</depositionDate>
            <releaseDate>2023-07-18</releaseDate>
            <updateDate>2023-07-18</updateDate>
        </keyDates>
        <title>Purified tails from bacteriophage T5</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-9226-3382</authorORCID>
            <firstName>Romain</firstName>
            <lastName>Linares</lastName>
            <organization type="academic">Institut de Biologie Structurale</organization>
            <street>71 avenue des martyrs</street>
            <townOrCity>GRENOBLE</townOrCity>
            <stateOrProvince>-</stateOrProvince>
            <country>France</country>
            <postOrZipCode>38044 CEDEX9</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9226-3382</authorORCID>
            <firstName>Romain</firstName>
            <lastName>Linares</lastName>
            <organization type="academic">Institut de Biologie Structurale</organization>
            <street>71 avenue des Martyrs</street>
            <townOrCity>GRENOBLE</townOrCity>
            <country>France</country>
            <postOrZipCode>38044 CEDEX 9</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-9226-3382">Linares R</author>
            <author>Arnaud CA</author>
            <author authorORCID="0000-0002-6957-0875">Effantin G</author>
            <author authorORCID="0000-0001-7777-2381">Darnault C</author>
            <author>Epalle NH</author>
            <author authorORCID="0000-0002-5910-4707">Boeri Erba E</author>
            <author authorORCID="0000-0002-1459-3201">Schoehn G</author>
            <author authorORCID="0000-0002-4382-0434">Breyton C</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">6.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-11319</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>virus</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13953</emdbEntry>
            <emdbEntry>EMD-14733</emdbEntry>
            <emdbEntry>EMD-14790</emdbEntry>
            <emdbEntry>EMD-14869</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-9226-3382" order="1">Linares R</author>
                    <author order="2">Arnaud CA</author>
                    <author authorORCID="0000-0002-6957-0875" order="3">Effantin G</author>
                    <author authorORCID="0000-0001-7777-2381" order="4">Darnault C</author>
                    <author order="5">Epalle NH</author>
                    <author authorORCID="0000-0002-5910-4707" order="6">Boeri Erba E</author>
                    <author authorORCID="0000-0002-1459-3201" order="7">Schoehn G</author>
                    <author authorORCID="0000-0002-4382-0434" order="8">Breyton C</author>
                    <title>Structural basis of bacteriophage T5 infection trigger and &lt;i&gt;E. coli&lt;/i&gt; cell wall perforation</title>
                    <journal>Science advances</journal>
                    <journalAbbreviation>Sci Adv</journalAbbreviation>
                    <country></country>
                    <issue>12</issue>
                    <volume>9</volume>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/sciadv.ade9674</externalReferences>
                    <externalReferences type="pubmed">36961893</externalReferences>
                    <details>This is a cryo-EM sample of purified tails from bacteriophage T5.

Typically, 3.5 µL of T5 tail sample were deposited on a freshly glow discharged (25 mA, 30 sec) Cu/Rh 300 mesh Quantifoil R 2/1 EM grids and plunge frozen in nitrogen-cooled liquid ethane using a ThermoFisher Mark IV Vitrobot device (100% humidity, 20°C, 5s blotting time, blot force 0)

The dataset contains 3208 40-frame movie, acquired on a Thermo Fisher Scientific Titan Krios G3 TEM (European Synchrotron Radiation Facility, Grenoble, France) operated at 300 kV and equipped with a Gatan Quantum energy filter coupled to a Gatan K2 summit direct electron detector. Automated data collection was performed using Thermo Fisher Scientific EPU software, with a typical defocus range of -1.0 to -3.0 µm and a total dose of 40 e-/Å2 per movie. A nominal magnification of 105.000x was used, resulting in a calibrated pixel size at the specimen level of 1.351 Å.</details>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0001-9226-3382" order="1">Linares R</author>
                    <author order="2">Arnaud CA</author>
                    <author authorORCID="0000-0002-6957-0875" order="3">Effantin G</author>
                    <author authorORCID="0000-0001-7777-2381" order="4">Darnault C</author>
                    <author order="5">Epalle NH</author>
                    <author authorORCID="0000-0002-5910-4707" order="6">Boeri Erba E</author>
                    <author authorORCID="0000-0002-1459-3201" order="7">Schoehn G</author>
                    <author authorORCID="0000-0002-4382-0434" order="8">Breyton C</author>
                    <title>Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation</title>
                    <journal>BioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <externalReferences type="doi">10.1101/2022.09.20.507954</externalReferences>
                    <details>This is a cryo-EM sample of purified tails from bacteriophage T5.

Typically, 3.5 µL of T5 tail sample were deposited on a freshly glow discharged (25 mA, 30 sec) Cu/Rh 300 mesh Quantifoil R 2/1 EM grids and plunge frozen in nitrogen-cooled liquid ethane using a ThermoFisher Mark IV Vitrobot device (100% humidity, 20°C, 5s blotting time, blot force 0)

The dataset contains 3208 40-frame movie, acquired on a Thermo Fisher Scientific Titan Krios G3 TEM (European Synchrotron Radiation Facility, Grenoble, France) operated at 300 kV and equipped with a Gatan Quantum energy filter coupled to a Gatan K2 summit direct electron detector. Automated data collection was performed using Thermo Fisher Scientific EPU software, with a typical defocus range of -1.0 to -3.0 µm and a total dose of 40 e-/Å2 per movie. A nominal magnification of 105.000x was used, resulting in a calibrated pixel size at the specimen level of 1.351 Å.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of phage T5 tails</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3208</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.351</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.351</pixelHeight>
        </dimensions>
        <details></details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
