<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11451" schemaVersion="0.63" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-02-17</depositionDate>
            <releaseDate>2023-07-10</releaseDate>
            <updateDate>2023-07-10</updateDate>
        </keyDates>
        <title>Cryo electron tomography of Cytochalasin D-induced protrusions of Drosophila S2 cells treated with DMSO or thapsigargin - Datasets 5 - 7</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-4406-5151</authorORCID>
            <firstName>Camilla</firstName>
            <lastName>Ventura Santos</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Cambridge Biomedical Campus, Francis Crick Ave</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7292-5430</authorORCID>
            <firstName>Andrew</firstName>
            <lastName>Carter</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Cambridge Biomedical Campus, Francis Crick Ave</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-4406-5151">Ventura Santos C</author>
            <author authorORCID="0000-0001-7292-5430">Carter AP</author>
            <author>Rogers SL</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Medical Research Council (MRC, United Kingdom)</fundingBody>
                <code>MC_UP_A025_1011</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Welch Foundation</fundingBody>
                <code>210711/Z/18/Z</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">373.1</datasetSize>
        <entryDOI>10.6019/EMPIAR-11451</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-16720</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author authorORCID="0000-0002-4406-5151" order="1">Ventura Santos C</author>
                    <author authorORCID="0000-0001-7292-5430" order="2">Carter AP</author>
                    <author order="3">Rogers SL</author>
                    <title>CryoET shows cofilactin filaments inside the microtubule lumen</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                </journalCitation>
            </universalCitation>
        </citationList>
        <relatedEmpiarEntries>
            <empiarEntry>EMPIAR-11450</empiarEntry>
        </relatedEmpiarEntries>
    </crossReferences>
    <imageSet>
        <name>Dataset 5: Raw multi-frame tilt images of Cytochalasin D and DMSO or thapsigarging treated Drosophila S2 cells</name>
        <directory>/data/Dataset5_220617/raw_movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>24</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.952</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.952</pixelHeight>
        </dimensions>
        <details>Data from Dataset 5. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours and treated with either 0.1% DMSO (TS_201 - TS_214) or 2 uM thapsigargin (TS_215 - TS_228). The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit. Metadata from tilt series acquisition (Mdoc files) can be found within the Mdoc_files folder.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 5: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions</name>
        <directory>/data/Dataset5_220617/bin4_deconvolved_tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>24</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>960</imageWidth>
            <pixelWidth>11.81</pixelWidth>
            <imageHeight>928</imageHeight>
            <pixelHeight>11.81</pixelHeight>
        </dimensions>
        <details>Dataset 5: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP. Tomograms TS_201 - TS_214 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 0.1% DMSO (5 hours). TS_215 - TS_228 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 2 uM thapsigargin (5 hours).</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 6: Raw multi-frame tilt images of Cytochalasin D and DMSO or thapsigarging treated Drosophila S2 cells</name>
        <directory>/data/Dataset6_220720/raw_movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>33</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.952</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.952</pixelHeight>
        </dimensions>
        <details>Data from Dataset 6. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours and treated with either 0.1% DMSO (TS_262 - TS_284) or 2 uM thapsigargin (TS_153 - TS_161 and TS_243 - TS_251). The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit. Metadata from tilt series acquisition (Mdoc files) can be found within the Mdoc_files folder.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 6: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions</name>
        <directory>/data/Dataset6_220720/bin4_deconvolved_tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>33</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>960</imageWidth>
            <pixelWidth>11.81</pixelWidth>
            <imageHeight>928</imageHeight>
            <pixelHeight>11.81</pixelHeight>
        </dimensions>
        <details>Dataset 6: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP. 
Tomograms TS_262 - TS_282 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 0.1% DMSO (5 hours). TS_153 - TS_161 and TS_243 - TS_251 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 2 uM thapsigargin (5 hours).</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 7: Raw multi-frame tilt images of Cytochalasin D and DMSO or thapsigarging treated Drosophila S2 cells</name>
        <directory>/data/Dataset7_220721/raw_movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>33</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>2.659</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>2.659</pixelHeight>
        </dimensions>
        <details>Data from Dataset 7. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours and treated with either 0.1% DMSO (TS_304 - TS_328) or 2 uM thapsigargin (TS_285 - TS_303 and TS_329). The gain reference is provided within the folder. The pixel size is 2.659 Å/pixel. Data was collected on a K3 detector. Metadata from tilt series acquisition (Mdoc files) can be found within the Mdoc_files folder.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 7: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions</name>
        <directory>/data/Dataset7_220721/bin4_deconvolved_tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>33</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>1022</imageWidth>
            <pixelWidth>10.64</pixelWidth>
            <imageHeight>1440</imageHeight>
            <pixelHeight>10.64</pixelHeight>
        </dimensions>
        <details>Dataset 6: Tomograms binned by 4 (10.64 Å/pixel), reconstructed and deconvolved in WARP. 
Tomograms TS_304 - TS_328 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 0.1% DMSO (5 hours). TS_285 - TS_303 and TS_329 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 2 uM thapsigargin (5 hours).</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
