<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11596" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-05-31</depositionDate>
            <releaseDate>2024-03-18</releaseDate>
            <updateDate>2024-03-18</updateDate>
        </keyDates>
        <title>Seeded Aβ(1-40) amyloid fibril</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-9442-460X</authorORCID>
            <firstName>Matthias</firstName>
            <lastName>Schmidt</lastName>
            <organization type="academic">Institut für Proteinbiochemie, Universität Ulm</organization>
            <street>8/1 Helmholtzstrasse</street>
            <townOrCity>Ulm</townOrCity>
            <stateOrProvince>Baden Württemberg</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>89081</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-2123-6816</authorORCID>
            <firstName>Marcus</firstName>
            <lastName>Fändrich</lastName>
            <organization type="academic">Institut für Proteinbiochemie, Universität Ulm</organization>
            <street>8/1 Helmholtzstrasse</street>
            <townOrCity>Ulm</townOrCity>
            <stateOrProvince>Baden Württemberg</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>89081</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0009-0004-3946-3579">Pfeiffer PB</author>
            <author authorORCID="0000-0002-9442-460X">Schmidt M</author>
            <author authorORCID="0000-0003-2123-6816">Fändrich M</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>FA 456/24-1</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">550.2</datasetSize>
        <entryDOI>10.6019/EMPIAR-11596</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-17168</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0009-0004-3946-3579" order="1">Pfeiffer PB</author>
                    <author order="2">Ugrina M</author>
                    <author order="3">Schwierz N</author>
                    <author order="4">Sigurdson CJ</author>
                    <author authorORCID="0000-0002-9442-460X" order="5">Schmidt M</author>
                    <author authorORCID="0000-0003-2123-6816" order="6">Fändrich M</author>
                    <title>Cryo-EM analysis of the effect of seeding with brain-derived Aβ amyloid fibrils</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country>Germany</country>
                    <language>English</language>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of seeded Aβ(1-40) amyloid fibrils</name>
        <directory>/data/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3018</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.04</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.04</pixelHeight>
        </dimensions>
        <details>Krios1 Quantum-K2
Cs 2.7
300kV EFTEM nanpprobe
x130k spot 8 beam size 650nm
c2=50  objective_aperture=100

GIF-K2 counting
10s exposure 40 frames
total dose at the sample 53.79e/A2
1 pixel = 1.04A
dose rate ~4-5 e/pix/s

defocus range -0.8 to -2.0

The gain reference (/data/data/CountRef_map_0117_001.dm4) is not applied to the micrographs. The NOTES.txt file contains EM information. Thumbnails and power spectra (/data/thumbs) as well as coordinates (/data/manual pick) are provided.</details>
        <segmentationList/>
        <micrographsFilePattern>data/data/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/manual pick/*.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/manual pick</pickedParticlesDirectory>
    </imageSet>
</entry>
