<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12179" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-07-11</depositionDate>
            <releaseDate>2024-08-29</releaseDate>
            <updateDate>2024-08-29</updateDate>
        </keyDates>
        <title>SPOT-RASTR - a cryo-EM specimen preparation technique that overcomes problems with preferred orientation and the air/water interface</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-8855-4152</authorORCID>
            <firstName>Scott</firstName>
            <lastName>Stagg</lastName>
            <organization type="academic">Florida State University</organization>
            <street>91 Chieftan Way</street>
            <townOrCity>Tallahassee</townOrCity>
            <stateOrProvince>FL</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>32306-4380</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-5954-8933</authorORCID>
            <firstName>Behrouz</firstName>
            <lastName>Ghazi Esfahani</lastName>
            <organization type="academic">us</organization>
            <street>91 Chieftan Way</street>
            <townOrCity>Tallahassee</townOrCity>
            <stateOrProvince>FL</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>32304</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-5954-8933">Ghazi Esfahani BGE</author>
            <author authorORCID="0000-0002-9884-2964">Randolph PR</author>
            <author authorORCID="0000-0001-6057-8961">Peng RP</author>
            <author authorORCID="0000-0002-4393-1951">Stroupe MES</author>
            <author authorORCID="0000-0002-4855-8703">Grant TG</author>
            <author authorORCID="0000-0001-8855-4152">Stagg SMS</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</fundingBody>
                <code>GM148734</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">304.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-12179</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-43514</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author order="1">Esfahani BG</author>
                    <author order="2">Randolph PS</author>
                    <author order="3">Peng R</author>
                    <author order="4">Grant T</author>
                    <author order="5">Stroupe ME</author>
                    <author authorORCID="0000-0001-8855-4152" order="6">Stagg SM</author>
                    <title>SPOT-RASTR - a cryo-EM specimen preparation technique that overcomes problems with preferred orientation and the air/water interface</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation>PNAS Nexus</journalAbbreviation>
                    <country>United States</country>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1101/2024.01.24.577038</externalReferences>
                    <externalReferences type="pubmed">38501120</externalReferences>
                    <details>The tube picks stack plus the azimuthal average to subtract.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>SPOT-RASTR - a cryo-EM specimen preparation technique that overcomes problems with preferred orientation and the air/water interface</name>
        <directory>/data</directory>
        <category>picked particles - single frame - unprocessed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>230000</numImagesOrTiltSeries>
        <framesPerImage>80</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.44</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.44</pixelHeight>
        </dimensions>
        <details>The particle stack is the picked lipid nanotube particles. The 3D volume is the tube azimuthal average to be subtracted from the picked particles for further processing based on the described protocol in the SPOT-RASTR paper.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/J256_stack.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
