<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-13850" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2026-07-27</depositionDate>
            <releaseDate>2026-08-13</releaseDate>
            <updateDate>2026-08-13</updateDate>
        </keyDates>
        <title>Cryo-EM structure of TrhO from B. subtilis complexed with tRNA Ala</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-6785-616X</authorORCID>
            <firstName>Gyuhyeok</firstName>
            <lastName>Cho</lastName>
            <organization type="academic">Department of Chemistry, Gwangju Institute of Science and Technology</organization>
            <street>123, Cheomdangwagi-ro, Buk-gu</street>
            <townOrCity>Jeonnam-Gwangju</townOrCity>
            <country>Korea, South</country>
            <postOrZipCode>61005</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-5213-9299</authorORCID>
            <firstName>Jungwook</firstName>
            <lastName>Kim</lastName>
            <organization type="academic">Department of Chemistry, Gwangju Institute of Science and Technology</organization>
            <street>123, Cheomdangwagi-ro, Buk-gu</street>
            <townOrCity>Jeonnam-Gwangju</townOrCity>
            <country>Korea, South</country>
            <postOrZipCode>61005</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0009-0009-4788-0539">Shin K</author>
            <author authorORCID="0000-0001-5213-9299">Kim J</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Research Foundation (NRF, Korea)</fundingBody>
                <code>RS-2024-00411137</code>
                <country>Korea, South</country>
            </grantReference>
            <grantReference>
                <fundingBody>National Research Foundation (NRF, Korea)</fundingBody>
                <code>RS-2024-00440614</code>
                <country>Korea, South</country>
            </grantReference>
            <grantReference>
                <fundingBody>National Research Foundation (NRF, Korea)</fundingBody>
                <code>RS-2025-23323757</code>
                <country>Korea, South</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">10.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-13850</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-61148</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0009-0009-4788-0539" order="1">Shin K</author>
                    <author authorORCID="0009-0007-3948-4873" order="2">Han DB</author>
                    <author authorORCID="0000-0002-2472-2046" order="3">Kim HW</author>
                    <author authorORCID="0000-0001-5213-9299" order="4">Kim J</author>
                    <title>Unconventional monooxygenation by the O&amp;lt;sub&amp;gt;2&amp;lt;/sub&amp;gt;-dependent tRNA wobble uridine hydroxylase TrhO</title>
                    <journal>Nature chemical biology</journal>
                    <journalAbbreviation>Nat Chem Biol</journalAbbreviation>
                    <country></country>
                    <issue>6</issue>
                    <volume>22</volume>
                    <firstPage>886</firstPage>
                    <lastPage>894</lastPage>
                    <year>2026</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41589-025-02129-2</externalReferences>
                    <externalReferences type="pubmed">41554887</externalReferences>
                    <details>Videos were collected using EPU (version 2.14.0; Thermo Fisher Scientific) in counting mode with a total dose of 60 e− per Å2 for a 7.15-s exposure. A total of 10,314 videos were recorded in EER format at a nominal magnification of ×130,000, corresponding to a physical pixel size of 0.9013 Å, with a defocus range from −0.6 to −2.1 μm.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Cryo-EM structure of TrhO from B. subtilis complexed with tRNA Ala</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>10314</numImagesOrTiltSeries>
        <framesPerImage>60</framesPerImage>
        <voxelType>BIT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.9013</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.9013</pixelHeight>
        </dimensions>
        <details>Videos were collected using EPU (version 2.14.0; Thermo Fisher Scientific) in counting mode with a total dose of 60 e− per Å2 for a 7.15-s exposure. A total of 10,314 videos were recorded in EER format at a nominal magnification of ×130,000, corresponding to a physical pixel size of 0.9013 Å, with a defocus range from −0.6 to −2.1 μm.</details>
        <segmentationList/>
        <micrographsFilePattern>data/GridSquare_*/Data/*.eer</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
