<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10695" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-03-29</depositionDate>
            <releaseDate>2022-01-24</releaseDate>
            <updateDate>2022-01-24</updateDate>
        </keyDates>
        <title>Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-3153-9490</authorORCID>
            <firstName>Axel</firstName>
            <lastName>Innis</lastName>
            <organization type="academic">ARNA,INSERM, IECB</organization>
            <street>2, rue Robert Escarpit</street>
            <townOrCity>Pessac</townOrCity>
            <stateOrProvince>Gironde</stateOrProvince>
            <country>France</country>
            <postOrZipCode>33600</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0003-3153-9490</authorORCID>
            <firstName>Axel</firstName>
            <lastName>Innis</lastName>
            <organization type="academic">ARNA,INSERM, IECB</organization>
            <street>2, rue Robert Escarpit</street>
            <townOrCity>Pessac</townOrCity>
            <stateOrProvince>Gironde</stateOrProvince>
            <country>France</country>
            <postOrZipCode>33600</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-0044-2303">van der Stel AX</author>
            <author authorORCID="0000-0002-0838-7110">Gordon ER</author>
            <author authorORCID="0000-0002-8548-9428">Sengupta A</author>
            <author>Martínez AK</author>
            <author>Klepacki D</author>
            <author>Perry TN</author>
            <author authorORCID="0000-0001-8153-6146">Herrero Del Valle A</author>
            <author authorORCID="0000-0003-2256-693X">Vázquez-Laslop N</author>
            <author authorORCID="0000-0001-9891-9223">Sachs MS</author>
            <author authorORCID="0000-0002-4593-9957">Cruz-Vera LR</author>
            <author authorORCID="0000-0003-3153-9490">Innis CA</author>
        </authorsList>
        <datasetSize units="TB">6.9</datasetSize>
        <entryDOI>10.6019/EMPIAR-10695</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-12693</emdbEntry>
            <emdbEntry>EMD-12694</emdbEntry>
            <emdbEntry>EMD-12695</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-0044-2303" order="1">van der Stel AX</author>
                    <author authorORCID="0000-0002-0838-7110" order="2">Gordon ER</author>
                    <author authorORCID="0000-0002-8548-9428" order="3">Sengupta A</author>
                    <author order="4">Martínez AK</author>
                    <author order="5">Klepacki D</author>
                    <author order="6">Perry TN</author>
                    <author authorORCID="0000-0001-8153-6146" order="7">Herrero Del Valle A</author>
                    <author authorORCID="0000-0003-2256-693X" order="8">Vázquez-Laslop N</author>
                    <author authorORCID="0000-0001-9891-9223" order="9">Sachs MS</author>
                    <author authorORCID="0000-0002-4593-9957" order="10">Cruz-Vera LR</author>
                    <author authorORCID="0000-0003-3153-9490" order="11">Innis CA</author>
                    <title>Structural basis for the tryptophan sensitivity of TnaC-mediated ribosome stalling</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>12</volume>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-021-25663-8</externalReferences>
                    <externalReferences type="pubmed">34504068</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Raw multiframe micrographs of TnaC-WT-70S ribosome stalled on L-Trp</name>
        <directory>/data/TnaC_WT_raw_micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>8964</numImagesOrTiltSeries>
        <framesPerImage>35</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>35</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>0.907</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>0.907</pixelHeight>
        </dimensions>
        <details>Raw micrographs collected on a Talos Arctica (IECB-Bordeaux) with a nominal pixelsize of 0.93A/px (calibrated 0.907A/px) of the TnaC-WT-70S sample as described in the original reference. These micrographs were used to reconstruct the map EMDB-12693 and corresponding molecular model PDB-7O19. This map and model contain the 70S ribosome stalled on TnaC in response to L-tryptophan All image processing has been performed using RELION3.1</details>
        <segmentationList/>
        <micrographsFilePattern>data/TnaC_WT_raw_micrographs/Ribo_*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Raw multiframe micrographs of TnaC-R23F-70S ribosome stalled on L-Trp (dataset B)</name>
        <directory>/data/TnaC_R23F_Talos_IECB</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>8743</numImagesOrTiltSeries>
        <framesPerImage>35</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>35</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>0.907</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>0.907</pixelHeight>
        </dimensions>
        <details>Raw micrographs collected on a Talos Arctica (IECB-Bordeaux) with a nominal pixsize of 0.93A/px (calibrated 0.907A/px) of the TnaC-(R23F)-70S sample as described in the original reference. 
This dataset  (TnaC-(R23F)-70S_B) was used together with the dataset (TnaC-(R23F)-70S_A) to reconstruct the map EMDB-12695 and corresponding molecular model PDB-7O1C. This map and model contains the 70S ribosome stalled on TnaC-(R23F) in response to L-tryptophan in complex with release factor 2 (RF2) in the A-site in a near-active conformation. 
All image processing has been performed using RELION3.1</details>
        <segmentationList/>
        <micrographsFilePattern>data/TnaC_R23F_Talos_IECB/R23F_*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Raw multiframe micrographs of TnaC-R23F-70S ribosome stalled on L-Trp (dataset A)</name>
        <directory>/data/TnaC_R23F_KRIOS_ESRF_raw_micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>7867</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>0.835</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>0.835</pixelHeight>
        </dimensions>
        <details>Raw micrographs collected on a Titan KRIOS (ESRF-Grenoble) with a nominal pixsize of 0.827A/px (calibrated 0.835A/px) of the TnaC-(R23F)-70S sample as described in the original reference. 
This dataset  (TnaC-(R23F)-70S_B) was used to reconstruct the map EMDB-12694 and corresponding molecular model PDB-7O1A. This map and model contains the 70S ribosome stalled on TnaC-(R23F) in response to L-tryptophan.
In addition, this dataset was also used together with the dataset (TnaC-(R23F)-70S_B) to reconstruct the map EMDB-12695 and corresponding molecular model PDB-7O1C. This map and model contains the 70S ribosome stalled on TnaC-(R23F) in response to L-tryptophan in complex with release factor 2 (RF2) in the A-site in a near-active conformation. 
All image processing has been performed using RELION3.1</details>
        <segmentationList/>
        <micrographsFilePattern>data/TnaC_R23F_KRIOS_ESRF_raw_micrographs/FoilHole_*.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
