<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10059" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2016-06-07</depositionDate>
            <releaseDate>2016-06-07</releaseDate>
            <updateDate>2016-06-07</updateDate>
        </keyDates>
        <title>Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-1248-1828</authorORCID>
            <firstName>Yuan</firstName>
            <lastName>Gao</lastName>
            <organization type="academic">Department of Biochemistry and Biophysics, University of California, San Francisco</organization>
            <street>600 16th Street</street>
            <townOrCity>San Francisco</townOrCity>
            <stateOrProvince>California</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>94158</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9535-0369</authorORCID>
            <firstName>Yifan</firstName>
            <lastName>Cheng</lastName>
            <organization type="academic">Department of Biochemistry and Biophysics, University of California, San Francisco</organization>
            <street>600 16th Street</street>
            <townOrCity>San Francisco</townOrCity>
            <stateOrProvince>California</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>94158</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-6365-4867</authorORCID>
            <firstName>David</firstName>
            <lastName>Julius</lastName>
            <organization type="academic">Department of Physiology, University of California, San Francisco</organization>
            <street>600 16th Street</street>
            <townOrCity>San Francisco</townOrCity>
            <stateOrProvince>California</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>94158</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-1248-1828">Gao Y</author>
        </authorsList>
        <datasetSize units="GB">93.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-10059</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-8117</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Gao Y</author>
                    <author order="2">Cao E</author>
                    <author order="3">Julius D</author>
                    <author order="4">Cheng Y</author>
                    <title>TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>7607</issue>
                    <volume>534</volume>
                    <firstPage>347</firstPage>
                    <lastPage>351</lastPage>
                    <year>2016</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/nature17964</externalReferences>
                    <externalReferences type="pubmed">27281200</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Motion corrected, dose-weighted sum of micrographs of TRPV1-DkTx/RTX embedded in lipid nanodisc</name>
        <directory>/data/micrographs</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1200</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.2156</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.2156</pixelHeight>
        </dimensions>
        <details>All image stacks (accumulating 41 electrons per squared Angstrom exposure in 30 frames / 6 second exposure) were drift-corrected using software UcsfDfCorr. '5 X 5' patch option was used. Dose rate was set to 1.4 electrons to perform the exposure filtering procedure implemented in  the program. Deposited data is the sum of all corrected frames.  </details>
        <segmentationList/>
    </imageSet>
    <imageSet>
        <name>Raw particle image stack of TRPV1-DkTx/RTX embedded in lipid nanodisc</name>
        <directory>/data/particles</directory>
        <category>picked particles - multiframe - unprocessed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>218805</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>192</imageWidth>
            <pixelWidth>1.2156</pixelWidth>
            <imageHeight>192</imageHeight>
            <pixelHeight>1.2156</pixelHeight>
        </dimensions>
        <details>Particle image stacks extracted from individual micrographs, without further processing. 
'particles.star' list all relevant information for every particle in all image stacks (coordinate, defocus etc.)</details>
        <segmentationList/>
    </imageSet>
</entry>
