+ Run autopicking on the following micrographs: * MotionCorr/job002/Movies/190117_02_00081_UnderDefocus0_6um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00098_UnderDefocus1_2um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00120_UnderDefocus1_0um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00150_UnderDefocus0_5um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00277_UnderDefocus0_7um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00282_UnderDefocus0_7um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00362_UnderDefocus0_7um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00431_UnderDefocus0_9um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00436_UnderDefocus0_9um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00441_UnderDefocus0_9um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00468_UnderDefocus0_6um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00557_UnderDefocus1_2um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00730_UnderDefocus0_9um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00770_UnderDefocus0_5um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00797_UnderDefocus0_9um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00809_UnderDefocus1_1um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00823_UnderDefocus1_1um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00927_UnderDefocus0_6um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00945_UnderDefocus0_8um_frameImage.mrc * MotionCorr/job002/Movies/190117_02_00967_UnderDefocus0_7um_frameImage.mrc + Automatically set the background diameter to 138.493 Angstrom + You can override this by providing --particle_diameter (in Angstroms) + WARNING: Requested rescale of micrographs is 3838 pixels. The largest prime factor in FFTs is 101 + WARNING: Will change rescaling of micrographs to 3772 pixels, because the prime factor then becomes 41 + WARNING: add --skip_optimise_scale to your autopick command to prevent rescaling Initialising FFTs for the references and masks ... 000/??? sec ~~(,_,"> [oo] 3/ 15 sec ...........~~(,_,"> 7/ 17 sec .......................~~(,_,"> 11/ 18 sec ....................................~~(,_,"> 14/ 17 sec ................................................~~(,_,"> 18/ 18 sec ............................................................~~(,_,"> + Using GPU device 0 Autopicking ... 000/??? sec ~~(,_,"> [oo] 0.25/5.00 min ...~~(,_,"> 0.43/4.33 min ......~~(,_,"> 0.57/3.77 min ........~~(,_,"> 0.82/4.08 min ...........~~(,_,"> 0.97/3.87 min ...............~~(,_,"> 1.17/3.88 min ..................~~(,_,"> 1.27/3.62 min .....................~~(,_,"> 1.38/3.45 min .......................~~(,_,"> 1.50/3.33 min ...........................~~(,_,"> 1.58/3.17 min ..............................~~(,_,"> 1.68/3.05 min .................................~~(,_,"> 1.77/2.93 min ....................................~~(,_,"> 1.87/2.87 min .......................................~~(,_,"> 1.95/2.78 min ..........................................~~(,_,"> 2.07/2.75 min .............................................~~(,_,"> 2.32/2.88 min ................................................~~(,_,"> 2.40/2.82 min ...................................................~~(,_,"> 2.50/2.77 min ......................................................~~(,_,"> 2.73/2.87 min .........................................................~~(,_,"> 3.42/3.42 min ............................................................~~(,_,"> Generating logfile.pdf ... 000/??? sec ~~(,_,"> [oo] 0/ 0 sec ............................................................~~(,_,"> Total number of particles from 20 micrographs is 2256 i.e. on average there were 113 particles per micrograph Done! Written: AutoPick/job010/logfile.pdf